RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TOR1BO14657 336 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 TMEM63AO94886 807 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 ECEL1O95672 775 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 CSF2P04141 144 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 HOXC4P09017 264 aaPredicted RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 TEAD1P28347 426 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 CCT8P50990 548 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 ZNF140P52738 457 aaPredicted RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 TMPRSS15P98073 1019 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 TCEA2Q15560 299 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 C4orf22Q6V702 233 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 PPP1R21Q6ZMI0 780 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 RAVER1Q8IY67 606 aaKnown RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 SLC25A45Q8N413 288 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 WDR92Q96MX6 357 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 SPATA16Q9BXB7 569 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 EIF2B3Q9NR50 452 aaKnown RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 NFKBIL1Q9UBC1 381 aaPredicted RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 RNF14Q9UBS8 474 aa19.44■□□□□ 0.7
CLN3-225ENST00000566824 CDV3Q9UKY7 258 aaKnown RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 PCNX2A6NKB5 2137 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 CACNB4O00305 520 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 SH3BP5O60239 455 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A9O60656 530 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 CEACAM5P06731 702 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 CELA2BP08218 269 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 ZNF883P0CG24 379 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 MYCLP1P12525 358 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 NME1P15531 152 aaKnown RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A6P19224 532 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 LPOP22079 712 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A1P22309 533 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A4P22310 534 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A3P35503 534 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A5P35504 534 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 DCDC1P59894 354 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 C2orf54Q08AI8 447 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 CDH17Q12864 832 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 SEPT6Q14141 434 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 PTK2BQ14289 1009 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 CHRNA6Q15825 494 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 DOK6Q6PKX4 331 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 FAM151BQ6UXP7 276 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 DBX2Q6ZNG2 339 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 RD3Q7Z3Z2 195 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 PIP4P1Q86T03 277 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 LINC00523Q86TU6 105 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 HID1Q8IV36 788 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 PHACTR4Q8IZ21 702 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 DNAAF3Q8N9W5 541 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 SLCO2A1Q92959 643 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 COX14Q96I36 57 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 KRT12Q99456 494 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 TRIM51Q9BSJ1 452 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 FRMD8Q9BZ67 464 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A7Q9HAW7 530 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A10Q9HAW8 530 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 UGT1A8Q9HAW9 530 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 PHPT1Q9NRX4 125 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 FEZ2Q9UHY8 353 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 FKBPLQ9UIM3 349 aa19.43■□□□□ 0.7
CLN3-225ENST00000566824 PCYT1BQ9Y5K3 369 aaPredicted RBP19.43■□□□□ 0.7
CLN3-225ENST00000566824 STX7O15400 261 aaKnown RBP19.42■□□□□ 0.7
CLN3-225ENST00000566824 TTI1O43156 1089 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 DFNA5O60443 496 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 PIAS2O75928 621 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 GIMD1P0DJR0 217 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 JUNDP17535 347 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 TPSB2P20231 275 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 DGKAP23743 735 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 MAGEA6P43360 314 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 ARRB1P49407 418 aaPredicted RBP19.42■□□□□ 0.7
CLN3-225ENST00000566824 SRP54P61011 504 aaKnown RBP19.42■□□□□ 0.7
CLN3-225ENST00000566824 CRADDP78560 199 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 C1orf61Q13536 156 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 PTK6Q13882 451 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 TPSAB1Q15661 275 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 ATP13A5Q4VNC0 1218 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 KHDC1Q4VXA5 237 aaKnown RBP19.42■□□□□ 0.7
CLN3-225ENST00000566824 TRAM1L1Q8N609 369 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 SPATA4Q8NEY3 305 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 OR56A4Q8NGH8 313 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 GRK7Q8WTQ7 553 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 HIC2Q96JB3 615 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 DNAJC1Q96KC8 554 aaKnown RBP19.42■□□□□ 0.7
CLN3-225ENST00000566824 PLEKHG4BQ96PX9 1271 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 SUDS3Q9H7L9 328 aaPredicted RBP19.42■□□□□ 0.7
CLN3-225ENST00000566824 KLQ9UEF7 1012 aa19.42■□□□□ 0.7
CLN3-225ENST00000566824 DCDC2BA2VCK2 349 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 C2orf81A6NN90 581 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 CCDC188H7C350 402 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 PCDHGA12O60330 932 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 AVILO75366 819 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 URI1O94763 535 aaPredicted RBP19.41■□□□□ 0.7
CLN3-225ENST00000566824 GAS8O95995 478 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 IVDP26440 423 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 HTR1BP28222 390 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 SPAM1P38567 509 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 SESN2P58004 480 aaPredicted RBP19.41■□□□□ 0.7
CLN3-225ENST00000566824 XIAPP98170 497 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms