RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PCDHGA8Q9Y5G5 932 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 LRP4O75096 1905 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 LAMA5O15230 3695 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 RP1P56715 2156 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 CCDC187A0A096LP49 1063 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 RHPN2P1A8MT19 583 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 INHBCP55103 352 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 MAZP56270 477 aaKnown RBP20.61■□□□□ 0.89
CLN3-219ENST00000565778 CDK18Q07002 472 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 TFDP3Q5H9I0 405 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 B3GNT8Q7Z7M8 397 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 DAAM2Q86T65 1068 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 CCDC50Q8IVM0 306 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 ARL14Q8N4G2 192 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 SPATA22Q8NHS9 363 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 SCARF2Q96GP6 870 aaPredicted RBP20.61■□□□□ 0.89
CLN3-219ENST00000565778 TMEM74Q96NL1 305 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 OR2M4Q96R27 311 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 PANX2Q96RD6 677 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 WDR24Q96S15 920 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 FOXP3Q9BZS1 431 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 STRADBQ9C0K7 418 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 CDH19Q9H159 772 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 ZFYVE1Q9HBF4 777 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 GLOD4Q9HC38 313 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 ASCL3Q9NQ33 180 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 ZNHIT2Q9UHR6 403 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 ATXN7L1Q9ULK2 861 aaPredicted RBP20.61■□□□□ 0.89
CLN3-219ENST00000565778 EPN1Q9Y6I3 576 aaPredicted RBP20.61■□□□□ 0.89
CLN3-219ENST00000565778 CELSR3Q9NYQ7 3312 aa20.61■□□□□ 0.89
CLN3-219ENST00000565778 A0A0A6YYK5 440 aaPredicted RBP20.6■□□□□ 0.89
CLN3-219ENST00000565778 RGSL1A5PLK6 1076 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 TNFSF15O95150 251 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 ECEL1O95672 775 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 ATP1A1P05023 1023 aaKnown RBP20.6■□□□□ 0.89
CLN3-219ENST00000565778 PIRTP0C851 137 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 ALDH4A1P30038 563 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 ACTR1BP42025 376 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 PDX1P52945 283 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 NAP1L1P55209 391 aaKnown RBP20.6■□□□□ 0.89
CLN3-219ENST00000565778 ACTR1AP61163 376 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 TAZQ16635 292 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 PYCR3Q53H96 274 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 LYSMD3Q7Z3D4 306 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 GALNT13Q8IUC8 556 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 TMTC1Q8IUR5 882 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 KATNAL2Q8IYT4 538 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 PRR11Q96HE9 360 aaPredicted RBP20.6■□□□□ 0.89
CLN3-219ENST00000565778 MRFAP1L1Q96HT8 127 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 COX14Q96I36 57 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 UBP1Q9NZI7 540 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 SHOC2Q9UQ13 582 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 ST14Q9Y5Y6 855 aa20.6■□□□□ 0.89
CLN3-219ENST00000565778 D6RAR5 112 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 ZW10O43264 779 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 PMPCBO75439 489 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 NDUFA10O95299 355 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 IPO7O95373 1038 aaKnown RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 MT-CYBP00156 380 aaPredicted RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 PECAM1P16284 738 aaPredicted RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 PTPN3P26045 913 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 ADCY2Q08462 1091 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 PRKD1Q15139 912 aaPredicted RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 IGF2-ASQ6U949 168 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 RAB11FIP2Q7L804 512 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 SPRED1Q7Z699 444 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 ZC3H18Q86VM9 953 aaKnown RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 SPACA3Q8IXA5 215 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 FBXO39Q8N4B4 442 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 LIN37Q96GY3 246 aaPredicted RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 TEKT5Q96M29 485 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 TRIB3Q96RU7 358 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 GPR63Q9BZJ6 419 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 MAGEE1Q9HCI5 957 aa20.59■□□□□ 0.89
CLN3-219ENST00000565778 CNOT6Q9ULM6 557 aaKnown RBP20.59■□□□□ 0.89
CLN3-219ENST00000565778 FAM208BQ5VWN6 2430 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 PMS2P1A4D2B8 440 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 SOWAHDA6NJG2 315 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 MTSS1O43312 755 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 B4GAT1O43505 415 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 OR1D5P58170 312 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 B4GALNT1Q00973 533 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 AMZ1Q400G9 498 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 HENMT1Q5T8I9 393 aaKnown RBP20.58■□□□□ 0.89
CLN3-219ENST00000565778 BROXQ5VW32 411 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 C11orf63Q6NUN7 778 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 CHST15Q7LFX5 561 aaPredicted RBP20.58■□□□□ 0.89
CLN3-219ENST00000565778 PID1Q7Z2X4 250 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 C17orf82Q86X59 251 aaPredicted RBP20.58■□□□□ 0.89
CLN3-219ENST00000565778 PATE1Q8WXA2 126 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 TADA1Q96BN2 335 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 HAUS1Q96CS2 278 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 RBM41Q96IZ5 413 aaKnown RBP20.58■□□□□ 0.89
CLN3-219ENST00000565778 SPATA16Q9BXB7 569 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 HEMGNQ9BXL5 484 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 PRKAB1Q9Y478 270 aa20.58■□□□□ 0.89
CLN3-219ENST00000565778 NBEAQ8NFP9 2946 aa20.58■□□□□ 0.88
CLN3-219ENST00000565778 TRBV23OR9-2A0A075B6M9 112 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 hCG_1818297A0A087WSY0 165 aa20.57■□□□□ 0.88
CLN3-219ENST00000565778 FADS2P1A8MWK0 482 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms