RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ARHGEF7Q14155 803 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PUM1Q14671 1186 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS35-206ENST00000565228 PROX2Q3B8N5 592 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 CERCAMQ5T4B2 595 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 RAET1GQ6H3X3 334 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PSAPL1Q6NUJ1 521 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 IL27RAQ6UWB1 636 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 ENPP7Q6UWV6 458 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 ZSCAN30Q86W11 494 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PARGQ86W56 976 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 SPNS2Q8IVW8 549 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PHACTR4Q8IZ21 702 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 EID2Q8N6I1 236 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PAF1Q8N7H5 531 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 ZNF548Q8NEK5 533 aaPredicted RBP9.17□□□□□ -0.94
VPS35-206ENST00000565228 OR52K1Q8NGK4 314 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 BLOC1S5Q8TDH9 187 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 AP2M1Q96CW1 435 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 IFT43Q96FT9 208 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 CAPZA3Q96KX2 299 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 TBL1YQ9BQ87 522 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 TRIM56Q9BRZ2 755 aaKnown RBP9.17□□□□□ -0.94
VPS35-206ENST00000565228 ADGRE3Q9BY15 652 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 TMEM168Q9H0V1 697 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A7Q9HAW7 530 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A10Q9HAW8 530 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 UGT1A8Q9HAW9 530 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 IL26Q9NPH9 171 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 DNAJC28Q9NX36 388 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 ZNF148Q9UQR1 794 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PRKAB1Q9Y478 270 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 PCDHGB2Q9Y5G2 931 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 NBEAQ8NFP9 2946 aa9.17□□□□□ -0.94
VPS35-206ENST00000565228 AKAP13Q12802 2813 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 PIKFYVEQ9Y2I7 2098 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 CCDC78A2IDD5 438 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 TP73O15350 636 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 FFAR2O15552 330 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 FOXD2O60548 495 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 DNAJC6O75061 913 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ANXA9O76027 345 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 TMEM63AO94886 807 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 SUN1O94901 812 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 EML2O95834 649 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 FGF1P05230 155 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 HOXC4P09017 264 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 MYCLP1P12525 358 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 TSHRP16473 764 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 JUNDP17535 347 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 HLA-DPA1P20036 260 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 TEAD1P28347 426 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 STIP1P31948 543 aaKnown RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 HMGCLP35914 325 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 NOVA1P51513 510 aaKnown RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 ZNF140P52738 457 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 ATXN3P54252 364 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 SRP54P61011 504 aaKnown RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 SLC14A1Q13336 389 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 KCNJ11Q14654 390 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 CHRNA6Q15825 494 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ATP13A5Q4VNC0 1218 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 CCDC38Q502W7 563 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 PPM1JQ5JR12 505 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ITPRIPL1Q6GPH6 555 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ADAMTSL4Q6UY14 1074 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ARHGEF18Q6ZSZ5 1173 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ZNF765Q7L2R6 523 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 DGLUCYQ7Z3D6 616 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 RD3Q7Z3Z2 195 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 NLRP8Q86W28 1048 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 HID1Q8IV36 788 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ZNF547Q8IVP9 402 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 NRSN1Q8IZ57 195 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 UBE2Q2Q8WVN8 375 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 ANP32BQ92688 251 aaKnown RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 MAGOHBQ96A72 148 aaKnown RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 SCARF2Q96GP6 870 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 WDR92Q96MX6 357 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 FRMD8P1Q9BZ68 369 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 DDX47Q9H0S4 455 aaKnown RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 FAM83DQ9H4H8 585 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 CASS4Q9NQ75 786 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 RAB6BQ9NRW1 208 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 NFKBIL1Q9UBC1 381 aaPredicted RBP9.16□□□□□ -0.94
VPS35-206ENST00000565228 SLC2A6Q9UGQ3 507 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 FKBPLQ9UIM3 349 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 SUFUQ9UMX1 484 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 SLC17A4Q9Y2C5 497 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 KIF26BQ2KJY2 2108 aa9.16□□□□□ -0.94
VPS35-206ENST00000565228 LAMA5O15230 3695 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 KNTC1P50748 2209 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 PRSS38A1L453 326 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 GOLGA6CA6NDK9 693 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 GOLGA6BA6NDN3 693 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 OR51F1A6NGY5 319 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 PGRMC1O00264 195 aaKnown RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 CES2O00748 559 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 YY2O15391 372 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SIGLEC6O43699 453 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SGTAO43765 313 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms