RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PDGFRLQ15198 375 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 CTSL3PQ5NE16 218 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 GRAMD4Q6IC98 578 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 ANKRD54Q6NXT1 300 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 GET4Q7L5D6 327 aaPredicted RBP12.85□□□□□ -0.35
SNX1-211ENST00000560829 SNX20Q7Z614 316 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 CLNKQ7Z7G1 428 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 MTDHQ86UE4 582 aaKnown RBP12.85□□□□□ -0.35
SNX1-211ENST00000560829 KDM1BQ8NB78 822 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 TXNDC5Q8NBS9 432 aaKnown RBP12.85□□□□□ -0.35
SNX1-211ENST00000560829 RHEBL1Q8TAI7 183 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 CYB5D2Q8WUJ1 264 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 KCNJ9Q92806 393 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 IL26Q9NPH9 171 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 MARCOQ9UEW3 520 aaPredicted RBP12.85□□□□□ -0.35
SNX1-211ENST00000560829 SLC8A2Q9UPR5 921 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 WASF2Q9Y6W5 498 aa12.85□□□□□ -0.35
SNX1-211ENST00000560829 CDH23Q9H251 3354 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 CCDC189A1A4V9 331 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 TTC34A8MYJ7 566 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 ZNF195O14628 629 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 BNIP3LO60238 219 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 NPHS1O60500 1241 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 HSPA4LO95757 839 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 UGT2B4P06133 528 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 PYGLP06737 847 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 ARSAP15289 507 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 ITGALP20701 1170 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 RPS3P23396 243 aaKnown RBP eCLIP12.84□□□□□ -0.35
SNX1-211ENST00000560829 SERPINB3P29508 390 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 PPARGP37231 505 aaPredicted RBP12.84□□□□□ -0.35
SNX1-211ENST00000560829 SPAM1P38567 509 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 HK2P52789 917 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 NAGLUP54802 743 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 NFKB2Q00653 900 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 NFATC2Q13469 925 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 GPR33Q49SQ1 333 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 LYPLAL1Q5VWZ2 237 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 PIWIL4Q7Z3Z4 852 aaKnown RBP12.84□□□□□ -0.35
SNX1-211ENST00000560829 HCAR2Q8TDS4 363 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 SORCS1Q8WY21 1168 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 ABHD8Q96I13 439 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 OSBPL1AQ9BXW6 950 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 CIPCQ9C0C6 399 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 DERL2Q9GZP9 239 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 TFB2MQ9H5Q4 396 aaKnown RBP12.84□□□□□ -0.35
SNX1-211ENST00000560829 NSUN3Q9H649 340 aaKnown RBP12.84□□□□□ -0.35
SNX1-211ENST00000560829 IGFLR1Q9H665 355 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 BRD9Q9H8M2 597 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 THG1LQ9NWX6 298 aaKnown RBP12.84□□□□□ -0.35
SNX1-211ENST00000560829 ZFP69BQ9UJL9 534 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 CDH7Q9ULB5 785 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 RAP2CQ9Y3L5 183 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 MTF2Q9Y483 593 aaPredicted RBP12.84□□□□□ -0.35
SNX1-211ENST00000560829 PCDHB1Q9Y5F3 818 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 NUMBLQ9Y6R0 609 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 TRANK1O15050 2925 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 LAMA3Q16787 3333 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 MYO7AQ13402 2215 aa12.84□□□□□ -0.35
SNX1-211ENST00000560829 GLYATL1P3A0A0U1RQE8 302 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 A8MT66 165 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 F8W8V4 182 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 RFXAPO00287 272 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 PRMT5O14744 637 aaPredicted RBP12.83□□□□□ -0.36
SNX1-211ENST00000560829 OR1I1O60431 355 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 VPS26AO75436 327 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 ATP5HO75947 161 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 IPO13O94829 963 aaKnown RBP12.83□□□□□ -0.36
SNX1-211ENST00000560829 UNC5CO95185 931 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 KITP10721 976 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 LHCGRP22888 699 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 LIG3P49916 1009 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 ATP6V0D1P61421 351 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 NCALDP61601 193 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 FCHO2Q0JRZ9 810 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 EIF4HQ15056 248 aaKnown RBP12.83□□□□□ -0.36
SNX1-211ENST00000560829 CTC1Q2NKJ3 1217 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 ZDHHC20Q5W0Z9 365 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 LRRC66Q68CR7 880 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 TAS2R42Q7RTR8 314 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 TSPAN33Q86UF1 283 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 SLC22A9Q8IVM8 553 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 STON2Q8WXE9 905 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 MYLIPQ8WY64 445 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 KLHL32Q96NJ5 620 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 TTC1Q99614 292 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 UNKQ9C0B0 810 aaKnown RBP12.83□□□□□ -0.36
SNX1-211ENST00000560829 EBF3Q9H4W6 596 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 ECT2Q9H8V3 914 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 SAR1AQ9NR31 198 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 PNPOQ9NVS9 261 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 DNAJC28Q9NX36 388 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 ELOVL2Q9NXB9 296 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 NCKIPSDQ9NZQ3 722 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.83□□□□□ -0.36
SNX1-211ENST00000560829 ATG2AQ2TAZ0 1938 aa12.83□□□□□ -0.36
SNX1-211ENST00000560829 OTOL1A6NHN0 477 aaPredicted RBP12.82□□□□□ -0.36
SNX1-211ENST00000560829 ZBTB14O43829 449 aa12.82□□□□□ -0.36
SNX1-211ENST00000560829 ZNF7P17097 686 aaPredicted RBP12.82□□□□□ -0.36
SNX1-211ENST00000560829 PTSQ03393 145 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms