RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PPHLN1Q8NEY8 458 aaKnown RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 PDCD6IPQ8WUM4 868 aaKnown RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 PTPRN2Q92932 1015 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 EXOC2Q96KP1 924 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ZNF641Q96N77 438 aaPredicted RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 OSBPL1AQ9BXW6 950 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 TM6SF2Q9BZW4 377 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 IL22Q9GZX6 179 aa11.8□□□□□ -0.52
LDLR-212ENST00000560467 ZC3H7BQ9UGR2 993 aaKnown RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 RPL26L1Q9UNX3 145 aaKnown RBP11.8□□□□□ -0.52
LDLR-212ENST00000560467 COL5A1P20908 1838 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3DA0A087WVF3 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3IA0A087WXS9 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3EA0A087X179 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3KA0A087X1G2 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3FA6NER0 549 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3LB9A6J9 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 K7ERQ8 282 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TK2O00142 265 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TRIM38O00635 465 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ALOX15BO15296 676 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ATP8B1O43520 1251 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 SOCS5O75159 536 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 NDST3O95803 873 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 MT-CYBP00156 380 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 FGF1P05230 155 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 POLBP06746 335 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 IVLP07476 585 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 GSTA2P09210 222 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3HP0C7X1 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 PLA2G2AP14555 144 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 CKMT2P17540 419 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 PAMP19021 973 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 SKOR1P84550 965 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 PDE1BQ01064 536 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 INSM1Q01101 510 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 TLE3Q04726 772 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 SPARCL1Q14515 664 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ELAVL3Q14576 367 aaKnown RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 PROX2Q3B8N5 592 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 BEND6Q5SZJ8 279 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3GQ6DHY5 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ALG1LQ6GMV1 187 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3CQ6IPX1 549 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 FBXO38Q6PIJ6 1188 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 TMC3Q7Z5M5 1100 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 PRPF39Q86UA1 669 aaKnown RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 RELL1Q8IUW5 271 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 GSPT2Q8IYD1 628 aaKnown RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 TBC1D3Q8IZP1 549 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 ZNF843Q8N446 348 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 OR52K1Q8NGK4 314 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ARRDC2Q8TBH0 407 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ANKRD7Q92527 254 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 STAMBPL1Q96FJ0 436 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 OXNAD1Q96HP4 312 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 HEPHQ9BQS7 1158 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 MLPHQ9BV36 600 aaPredicted RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 CPEB1Q9BZB8 566 aaKnown RBP11.79□□□□□ -0.52
LDLR-212ENST00000560467 TNKS2Q9H2K2 1166 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 CAAP1Q9H8G2 361 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 VPS37BQ9H9H4 285 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 ERVMER34-1Q9H9K5 563 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 DYRK4Q9NR20 520 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 SARDHQ9UL12 918 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 CLCA2Q9UQC9 943 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 IKBKGQ9Y6K9 419 aa11.79□□□□□ -0.52
LDLR-212ENST00000560467 PLXNA2O75051 1894 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 TCRBV7S3A2A0A539 114 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 SMAD6O43541 496 aaKnown RBP11.78□□□□□ -0.52
LDLR-212ENST00000560467 SIGLEC6O43699 453 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 TMEM63AO94886 807 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 CRTAMO95727 393 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 AGTP01019 485 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 PRNPP04156 253 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 FAM153BP0C7A2 387 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 MYBL2P10244 700 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 ADRA1DP25100 572 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 EIF3BP55884 814 aaKnown RBP11.78□□□□□ -0.52
LDLR-212ENST00000560467 NIPAL4Q0D2K0 466 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 ILKQ13418 452 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 KCTD19Q17RG1 926 aaPredicted RBP11.78□□□□□ -0.52
LDLR-212ENST00000560467 FAM153CQ494X1 144 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 ATXN7L2Q5T6C5 722 aaPredicted RBP11.78□□□□□ -0.52
LDLR-212ENST00000560467 FAM46CQ5VWP2 391 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 KCTD11Q693B1 232 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 PCSK4Q6UW60 755 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 RANBP10Q6VN20 620 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 ANKMY2Q8IV38 441 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 SPACA3Q8IXA5 215 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 PGBD5Q8N414 524 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 MREGQ8N565 214 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 OXR1Q8N573 874 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 SLC25A41Q8N5S1 370 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 DCBLD1Q8N8Z6 715 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 MFSD2AQ8NA29 543 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 FRS2Q8WU20 508 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 PTCD2Q8WV60 388 aaKnown RBP11.78□□□□□ -0.52
LDLR-212ENST00000560467 OR8D1Q8WZ84 308 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 FGF11Q92914 225 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms