RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ARFGAP3Q9NP61 516 aa14.26□□□□□ -0.13
USP3-205ENST00000557884 MRPL40Q9NQ50 206 aaKnown RBP14.26□□□□□ -0.13
USP3-205ENST00000557884 CASS4Q9NQ75 786 aa14.26□□□□□ -0.13
USP3-205ENST00000557884 UCKL1Q9NWZ5 548 aa14.26□□□□□ -0.13
USP3-205ENST00000557884 TMEM98Q9Y2Y6 226 aa14.26□□□□□ -0.13
USP3-205ENST00000557884 RALGAPA1Q6GYQ0 2036 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 BPTFQ12830 3046 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 DCDC2BA2VCK2 349 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 CCL22O00626 93 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 YKT6O15498 198 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 GPR39O43194 453 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 URI1O94763 535 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 CRTAMO95727 393 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 CSF2P04141 144 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 PYGLP06737 847 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 HOXC4P09017 264 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 NME1P15531 152 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 KCNA4P22459 653 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 KELP23276 732 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 TEAD1P28347 426 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 SPAM1P38567 509 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 PI4KAP42356 2102 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 PTGIRP43119 386 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 ZNF140P52738 457 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 SESN2P58004 480 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 DCDC1P59894 354 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 SRP54P61011 504 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 HNRNPKP61978 463 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP3-205ENST00000557884 MRPS25P82663 173 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 PPARDQ03181 441 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 C1orf61Q13536 156 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 KCNJ11Q14654 390 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 CHRNA6Q15825 494 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 MICALCLQ6ZW33 695 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 DEFB124Q8NES8 71 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 OR56A4Q8NGH8 313 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 SAP25Q8TEE9 199 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 PTCD2Q8WV60 388 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 HIC2Q96JB3 615 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 DNAJC1Q96KC8 554 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 KRT12Q99456 494 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 FRMD8Q9BZ67 464 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 IL26Q9NPH9 171 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 EIF2B3Q9NR50 452 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 NFKBIL1Q9UBC1 381 aaPredicted RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 APOBEC3BQ9UH17 382 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 ASIC3Q9UHC3 531 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 PCYOX1Q9UHG3 505 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 FKBPLQ9UIM3 349 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 CNOT6Q9ULM6 557 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 BTBD3Q9Y2F9 522 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 PCDHGB2Q9Y5G2 931 aa14.25□□□□□ -0.13
USP3-205ENST00000557884 OAS3Q9Y6K5 1087 aaKnown RBP14.25□□□□□ -0.13
USP3-205ENST00000557884 ADAMTS9Q9P2N4 1935 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 GLYATL1P3A0A0U1RQE8 302 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 H3BM21 787 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 CCDC188H7C350 402 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 FFAR2O15552 330 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 LDB2O43679 373 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 PCDHGA12O60330 932 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 PIAS2O75928 621 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 ASMTLO95671 621 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 CELA2BP08218 269 aaPredicted RBP14.24□□□□□ -0.13
USP3-205ENST00000557884 TPSB2P20231 275 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 DGKAP23743 735 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 DR1Q01658 176 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 C2orf54Q08AI8 447 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 SLC14A1Q13336 389 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 SUZ12Q15022 739 aaKnown RBP14.24□□□□□ -0.13
USP3-205ENST00000557884 TPSAB1Q15661 275 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 ATP13A5Q4VNC0 1218 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 PRRT3Q5FWE3 981 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 ZNF648Q5T619 568 aaPredicted RBP14.24□□□□□ -0.13
USP3-205ENST00000557884 MARK2Q7KZI7 788 aaKnown RBP14.24□□□□□ -0.13
USP3-205ENST00000557884 NAXDQ8IW45 347 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 TRAM1L1Q8N609 369 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 ZNF548Q8NEK5 533 aaPredicted RBP14.24□□□□□ -0.13
USP3-205ENST00000557884 LMX1AQ8TE12 382 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 CPT1BQ92523 772 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 COX14Q96I36 57 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 PLEKHG4BQ96PX9 1271 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 ZSCAN5AQ9BUG6 496 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 SLC13A1Q9BZW2 595 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 CDH19Q9H159 772 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 CYP4F12Q9HCS2 524 aa14.24□□□□□ -0.13
USP3-205ENST00000557884 PRSS38A1L453 326 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 GOLGA8MH3BSY2 632 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 TM4SF5O14894 197 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 TTI1O43156 1089 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 UGT1A9O60656 530 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 TMEM63AO94886 807 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 RASGRP1O95267 797 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 TNFP01375 233 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 CEACAM5P06731 702 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 UGT1A6P19224 532 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 SDHBP21912 280 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 UGT1A1P22309 533 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 UGT1A4P22310 534 aa14.23□□□□□ -0.13
USP3-205ENST00000557884 UGT1A3P35503 534 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms