RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 LRRC66Q68CR7 880 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 PARM1Q6UWI2 310 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 CHRDL2Q6WN34 429 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 EP400NLQ6ZTU2 488 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 CRLF3Q8IUI8 442 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 FSTL5Q8N475 847 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-233ENST00000557529 HEXDCQ8WVB3 486 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 OR8D1Q8WZ84 308 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 PLEKHG4BQ96PX9 1271 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 TRMT61BQ9BVS5 477 aaKnown RBP12.43□□□□□ -0.42
SHMT2-233ENST00000557529 PLA2G2FQ9BZM2 168 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 PRO3102Q9H379 93 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 FAM96AQ9H5X1 160 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 IL26Q9NPH9 171 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 IGSF5Q9NSI5 407 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 B4GALT6Q9UBX8 382 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 FNDC3AQ9Y2H6 1198 aaKnown RBP12.43□□□□□ -0.42
SHMT2-233ENST00000557529 PCDHB1Q9Y5F3 818 aa12.43□□□□□ -0.42
SHMT2-233ENST00000557529 PRRC2BQ5JSZ5 2229 aaKnown RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 TRBV5-4A0A0C4DH59 114 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 A0A0U1RQS6 177 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 TMEM114B3SHH9 223 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 TARM1B6A8C7 271 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 GAPDHSO14556 408 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 PRMT5O14744 637 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 VPS26AO75436 327 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 ZNF7P17097 686 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 POU3F3P20264 500 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 RPS3P23396 243 aaKnown RBP eCLIP12.42□□□□□ -0.426e-8■■■■□ 20.4
SHMT2-233ENST00000557529 SP100P23497 879 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 VIPR1P32241 457 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 GRIA2P42262 883 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 SKIV2L2P42285 1042 aaKnown RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 GLRBP48167 497 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 CDKN1CP49918 316 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 DLX2Q07687 328 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 DLG1Q12959 904 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 IFT88Q13099 833 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 NFATC2Q13469 925 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 UGT3A1Q6NUS8 523 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 FAM151BQ6UXP7 276 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 YTHDF3Q7Z739 585 aaKnown RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 TSPAN33Q86UF1 283 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 RBFAQ8N0V3 343 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 TMEM151AQ8N4L1 468 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 PNPLA1Q8N8W4 532 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 TMIEQ8NEW7 156 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 ST13P5Q8NFI4 369 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 PPP4R1Q8TF05 950 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 CCDC126Q96EE4 140 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 MSLNLQ96KJ4 702 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 POMKQ9H5K3 350 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 ASB8Q9H765 288 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 OXSMQ9NWU1 459 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 GTSE1Q9NYZ3 720 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 PKD2L2Q9NZM6 624 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 CPSF2Q9P2I0 782 aaKnown RBP12.42□□□□□ -0.42
SHMT2-233ENST00000557529 EPS15L1Q9UBC2 864 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 XPR1Q9UBH6 696 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 MTCH2Q9Y6C9 303 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 USH1CQ9Y6N9 552 aa12.42□□□□□ -0.42
SHMT2-233ENST00000557529 LAMA2P24043 3122 aaKnown RBP12.41□□□□□ -0.42
SHMT2-233ENST00000557529 MYO9BQ13459 2157 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 CCDC189A1A4V9 331 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 RGSL1A5PLK6 1076 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 CCT8L1PA6NM43 557 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 A8MX80 341 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 H3BMM5 538 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 TK2O00142 265 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 DNAJC6O75061 913 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 KAT7O95251 611 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 APODP05090 189 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 CTSLP07711 333 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 CHRM1P11229 460 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-233ENST00000557529 BMP1P13497 986 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 TIMP2P16035 220 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 ZNF37AP17032 561 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-233ENST00000557529 LHCGRP22888 699 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 ATP5F1P24539 256 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-233ENST00000557529 LTBRP36941 435 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 SLC1A6P48664 564 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 PGGT1BP53609 377 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 PTSQ03393 145 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 MESP2Q0VG99 397 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 SF3A3Q12874 501 aaKnown RBP eCLIP12.41□□□□□ -0.427e-8■■□□□ 11.4
SHMT2-233ENST00000557529 ITGA9Q13797 1035 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 ELAVL3Q14576 367 aaKnown RBP12.41□□□□□ -0.42
SHMT2-233ENST00000557529 ZNF234Q14588 700 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 LRIT3Q3SXY7 679 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 TECRLQ5HYJ1 363 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 C9orf64Q5T6V5 341 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 LIPMQ5VYY2 423 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 ERAP2Q6P179 960 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 SERPINA13PQ6UXR4 307 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 ZCCHC23Q6ZST2 131 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 CCDC121Q6ZUS5 278 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 DPPA4Q7L190 304 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 DSG4Q86SJ6 1040 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 PIM3Q86V86 326 aa12.41□□□□□ -0.42
SHMT2-233ENST00000557529 SERPINA9Q86WD7 417 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms