RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TXNDC5Q8NBS9 432 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 ZMIZ2Q8NF64 920 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 APOL4Q9BPW4 351 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 ZBTB26Q9HCK0 441 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SRRDQ9UH36 339 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 NAALAD2Q9Y3Q0 740 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 PCDHB12Q9Y5F1 795 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TEX264Q9Y6I9 313 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 A3GALT2U3KPV4 340 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 MYH9P35579 1960 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 PRORSD1PA6NEY8 169 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 METTL15A6NJ78 407 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 E5RI56 91 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 PLIN3O60664 434 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 HSMCR30P0CW71 290 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SFTPCP11686 197 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SRCP12931 536 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 CD68P34810 354 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TAS2R40P59535 323 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 NCS1P62166 190 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SNRPD2P62316 118 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 FAM98CQ17RN3 349 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 LRRC26Q2I0M4 334 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 IQCCQ4KMZ1 466 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 N4BP2L1Q5TBK1 243 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 KRT39Q6A163 491 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TIFABQ6ZNK6 161 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 THAP5Q7Z6K1 395 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 COMMD7Q86VX2 200 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 CMTR2Q8IYT2 770 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TMEM199Q8N511 208 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 PCDH20Q8N6Y1 951 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SETD6Q8TBK2 473 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 PHOSPHO2Q8TCD6 241 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 MAGEE2Q8TD90 523 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SGTBQ96EQ0 304 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SCYL1Q96KG9 808 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 UBXN10Q96LJ8 280 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 GTPBP2Q9BX10 602 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TMEM245Q9H330 911 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 CYP3A43Q9HB55 503 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 COA4Q9NYJ1 87 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SARDHQ9UL12 918 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 MKLN1Q9UL63 735 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SNX6Q9UNH7 406 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 KIAA1024Q9UPX6 916 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SCN4AP35499 1836 aa13.77□□□□□ -0.2
SHMT2-226ENST00000556825 CCDC182A6NF36 153 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 CCDC154A6NI56 674 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 DFNA5O60443 496 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 CFBP00751 764 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 C1QBP02746 253 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 FTH1P02794 183 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 KRT19P08727 400 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 FCGR1AP12314 374 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 ACVR2AP27037 513 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 RPL35P42766 123 aaKnown RBP13.77□□□□□ -0.21
SHMT2-226ENST00000556825 CTSWP56202 376 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 ERVK-8P63133 956 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 SETMARQ53H47 684 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-226ENST00000556825 TPRG1LQ5T0D9 272 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 INTS5Q6P9B9 1019 aaKnown RBP13.77□□□□□ -0.21
SHMT2-226ENST00000556825 HTR3DQ70Z44 454 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 ZBTB33Q86T24 672 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 MAPKAPK5Q8IW41 473 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 RCOR2Q8IZ40 523 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 OR8H1Q8NGG4 311 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 UTP15Q8TED0 518 aaKnown RBP13.77□□□□□ -0.21
SHMT2-226ENST00000556825 FAR1Q8WVX9 515 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 RIT1Q92963 219 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 NEDD4LQ96PU5 975 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 GAD1Q99259 594 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 KIFC3Q9BVG8 833 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 SPNS1Q9H2V7 528 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 PCIF1Q9H4Z3 704 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 TBC1D13Q9NVG8 400 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 TRPM5Q9NZQ8 1165 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 COL20A1Q9P218 1284 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 KLHL21Q9UJP4 597 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 PDE10AQ9Y233 779 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 PCDHGB2Q9Y5G2 931 aa13.77□□□□□ -0.21
SHMT2-226ENST00000556825 E2F3O00716 465 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 SLC37A4O43826 429 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 MED26O95402 600 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 NPR1P16066 1061 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 PRKCHP24723 683 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 CHRNA5P30532 468 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 RECQLP46063 649 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 PIGFQ07326 219 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TRAF3Q13114 568 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TSC22D1Q15714 1073 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 SGCAQ16586 387 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 LAMTOR1Q6IAA8 161 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 LRRC8EQ6NSJ5 796 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 TXNDC11Q6PKC3 985 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 JAZF1Q86VZ6 243 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 NAT16Q8N8M0 369 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 NSUN6Q8TEA1 469 aaKnown RBP13.76□□□□□ -0.21
SHMT2-226ENST00000556825 LGALS12Q96DT0 336 aa13.76□□□□□ -0.21
SHMT2-226ENST00000556825 LXNQ9BS40 222 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms