RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 KXD1Q9BQD3 176 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 LBHD1Q9BQE6 289 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TTYH1Q9H313 450 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ERVMER34-1Q9H9K5 563 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 FKRPQ9H9S5 495 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 C17orf75Q9HAS0 396 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 PPP1R14DQ9NXH3 145 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 MCM9Q9NXL9 1143 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF624Q9P2J8 865 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 PADI1Q9ULC6 663 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 ARHGAP26Q9UNA1 814 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 KLF2Q9Y5W3 355 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-218ENST00000556256 KDM3AQ9Y4C1 1321 aa3.09□□□□□ -1.91
SCFD1-218ENST00000556256 TAF1P21675 1872 aa3.09□□□□□ -1.92
SCFD1-218ENST00000556256 AGRNO00468 2067 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 C17orf113A0A1B0GUU1 675 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 F5H0A9 414 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-218ENST00000556256 EBAG9O00559 213 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 TNFSF14O43557 240 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 NDUFB4O95168 129 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 ADAP00813 363 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 GNB3P16520 340 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 CD72P21854 359 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 EPHA8P29322 1005 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-218ENST00000556256 HOXA1P49639 335 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-218ENST00000556256 CASP6P55212 293 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 CDH15P55291 814 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 RPP30P78346 268 aaKnown RBP3.08□□□□□ -1.92
SCFD1-218ENST00000556256 NAA25Q14CX7 972 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 ESCO2Q56NI9 601 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 ZNF667Q5HYK9 610 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 TRNP1Q6NT89 227 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 LURAP1LQ8IV03 231 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 C1orf87Q8N0U7 546 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 GHDCQ8N2G8 530 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 PLD5Q8N7P1 536 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 TNIP2Q8NFZ5 429 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 NFKBIDQ8NI38 313 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 DUSP19Q8WTR2 217 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 ZNF473Q8WTR7 871 aaKnown RBP3.08□□□□□ -1.92
SCFD1-218ENST00000556256 CNOT9Q92600 299 aaKnown RBP3.08□□□□□ -1.92
SCFD1-218ENST00000556256 SKA1Q96BD8 255 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 ST6GAL2Q96JF0 529 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 C7orf26Q96N11 449 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 ALKBH4Q9NXW9 302 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 PNMA2Q9UL42 364 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 NAALADL1Q9UQQ1 740 aa3.08□□□□□ -1.92
SCFD1-218ENST00000556256 TYW5A2RUC4 315 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 CBY3A6NI87 242 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 AKR1B15C9JRZ8 316 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 TNPO2O14787 897 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 LDLRAD4O15165 306 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 SRSF10O75494 262 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 PRSS56P0CW18 603 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 ITGAXP20702 1163 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 CAPN3P20807 821 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 S1PR1P21453 382 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 GPTP24298 496 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 RYKP34925 604 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 BLKP51451 505 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 GEMIN4P57678 1058 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 MRPS5P82675 430 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 TDGQ13569 410 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 FAM53AQ6NSI3 398 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 FAM180BQ6P0A1 224 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 RSRC2Q7L4I2 434 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 MAATS1Q7Z4T9 603 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 TBC1D1Q86TI0 1168 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 CHD1LQ86WJ1 897 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 ARMC8Q8IUR7 673 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 PARP16Q8N5Y8 322 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 MAGEC3Q8TD91 643 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 NR1H4Q96RI1 486 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 OPRPNQ99935 248 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 VGLL1Q99990 258 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 USP44Q9H0E7 712 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 SLC52A3Q9NQ40 469 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 ZDHHC18Q9NUE0 388 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 FAM120CQ9NX05 1096 aaKnown RBP3.07□□□□□ -1.92
SCFD1-218ENST00000556256 TINAGQ9UJW2 476 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 CNPY2Q9Y2B0 182 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 NFE2L3Q9Y4A8 694 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 PCDHGB5Q9Y5G0 923 aa3.07□□□□□ -1.92
SCFD1-218ENST00000556256 A0A087X0M5 115 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 A0A1B0GX30 115 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 MEIOCA2RUB1 952 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 PABPN1LA6NDY0 278 aaKnown RBP3.06□□□□□ -1.92
SCFD1-218ENST00000556256 TAF4O00268 1085 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 ARHGEF9O43307 516 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 BAIAP3O94812 1187 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 PRG2P13727 222 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 GNL1P36915 607 aaPredicted RBP3.06□□□□□ -1.92
SCFD1-218ENST00000556256 EFNA5P52803 228 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 KRTAP10-1P60331 282 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 SEC61BP60468 96 aaKnown RBP3.06□□□□□ -1.92
SCFD1-218ENST00000556256 EFNB1P98172 346 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 TMEM187Q14656 261 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 TSTQ16762 297 aaKnown RBP3.06□□□□□ -1.92
SCFD1-218ENST00000556256 HYIQ5T013 277 aa3.06□□□□□ -1.92
SCFD1-218ENST00000556256 FAAH2Q6GMR7 532 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms