RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MMEP08473 750 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 RNF224P0DH78 156 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 SERPINA4P29622 427 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 POLD2P49005 469 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 MC1RQ01726 317 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 RAPGEF1Q13905 1077 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 PARP15Q460N3 678 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 AFMIDQ63HM1 303 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 CEACAM20Q6UY09 585 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 ASB18Q6ZVZ8 466 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 DPPA4Q7L190 304 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 STRADAQ7RTN6 431 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 SRLQ86TD4 932 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 NOP9Q86U38 636 aaKnown RBP10.46□□□□□ -0.73
VPS29-208ENST00000550267 HEATR4Q86WZ0 1026 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 PAF1Q8N7H5 531 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 TSEN2Q8NCE0 465 aaKnown RBP10.46□□□□□ -0.73
VPS29-208ENST00000550267 SSC4DQ8WTU2 575 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 FAM172AQ8WUF8 416 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 CENPIQ92674 756 aaPredicted RBP10.46□□□□□ -0.73
VPS29-208ENST00000550267 ECHDC3Q96DC8 303 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 RNF31Q96EP0 1072 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 ATP13A3Q9H7F0 1226 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 PHPT1Q9NRX4 125 aaPredicted RBP10.46□□□□□ -0.73
VPS29-208ENST00000550267 PDP2Q9P2J9 529 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 PLEKHM1Q9Y4G2 1056 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 TMEM184BQ9Y519 407 aaPredicted RBP10.46□□□□□ -0.73
VPS29-208ENST00000550267 KCTD3Q9Y597 815 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 KCNMB2Q9Y691 235 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 UNC13CQ8NB66 2214 aa10.46□□□□□ -0.74
VPS29-208ENST00000550267 TRBV23OR9-2A0A075B6M9 112 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 C2CD4BA6NLJ0 364 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 WASH4PA8MWX3 477 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 MKRN2OSH3BPM6 223 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 CREB3O43889 395 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 SEMA7AO75326 666 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 DLGAP3O95886 979 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 F8A1P23610 371 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 ADCY8P40145 1251 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 ACTR1BP42025 376 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 STAT5AP42229 794 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 PTPN9P43378 593 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 CHRNA4P43681 627 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 MTIF2P46199 727 aaKnown RBP10.45□□□□□ -0.74
VPS29-208ENST00000550267 ACTR1AP61163 376 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 GPLD1P80108 840 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 BCL2L1Q07817 233 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 CRTC2Q53ET0 693 aaPredicted RBP10.45□□□□□ -0.74
VPS29-208ENST00000550267 TCTN3Q6NUS6 607 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 DPY19L2P1Q6NXN4 242 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 CHSY3Q70JA7 882 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 SLFN11Q7Z7L1 901 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 CCDC13Q8IYE1 715 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 ELOA2Q8IYF1 753 aaPredicted RBP10.45□□□□□ -0.74
VPS29-208ENST00000550267 UMODL1-AS1Q8N2C9 162 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 NTAN1Q96AB6 310 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 NUS1Q96E22 293 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 AHCYL2Q96HN2 611 aaKnown RBP10.45□□□□□ -0.74
VPS29-208ENST00000550267 COQ10AQ96MF6 247 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 NSMCE3Q96MG7 304 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 TEX101Q9BY14 249 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 PRDM8Q9NQV8 689 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 B4GALT6Q9UBX8 382 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 FHOD1Q9Y613 1164 aa10.45□□□□□ -0.74
VPS29-208ENST00000550267 GOLGA6CA6NDK9 693 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 GOLGA6BA6NDN3 693 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 PRAMEF11O60813 436 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 PDGFAP04085 211 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 GOLGA6DP0CG33 693 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 ADH6P28332 368 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 MAN1A1P33908 653 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 CSNK1DP48730 415 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 COPB1P53618 953 aaKnown RBP10.44□□□□□ -0.74
VPS29-208ENST00000550267 CDK3Q00526 305 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 ERV3-1Q14264 604 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 CNGA3Q16281 694 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 DENND2CQ68D51 928 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 DOK6Q6PKX4 331 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 ARHGAP22Q7Z5H3 698 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 GALNT11Q8NCW6 608 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 SLC30A5Q8TAD4 765 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 CELF6Q96J87 481 aaKnown RBP10.44□□□□□ -0.74
VPS29-208ENST00000550267 SLC38A3Q99624 504 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 C11orf70Q9BRQ4 267 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 ZPBPQ9BS86 351 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 TRIT1Q9H3H1 467 aaKnown RBP10.44□□□□□ -0.74
VPS29-208ENST00000550267 LRRC19Q9H756 370 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 CATSPERBQ9H7T0 1116 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 FBXO8Q9NRD0 319 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 GOLGA6AQ9NYA3 693 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 RPS6KL1Q9Y6S9 549 aa10.44□□□□□ -0.74
VPS29-208ENST00000550267 MYO9AB2RTY4 2548 aa10.43□□□□□ -0.74
VPS29-208ENST00000550267 TRAFD1O14545 582 aaPredicted RBP10.43□□□□□ -0.74
VPS29-208ENST00000550267 POLR1CO15160 346 aaPredicted RBP10.43□□□□□ -0.74
VPS29-208ENST00000550267 MAP3K6O95382 1288 aa10.43□□□□□ -0.74
VPS29-208ENST00000550267 EML2O95834 649 aa10.43□□□□□ -0.74
VPS29-208ENST00000550267 IVLP07476 585 aa10.43□□□□□ -0.74
VPS29-208ENST00000550267 MMP8P22894 467 aa10.43□□□□□ -0.74
VPS29-208ENST00000550267 ERCC5P28715 1186 aaPredicted RBP10.43□□□□□ -0.74
VPS29-208ENST00000550267 RFC1P35251 1148 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms