RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZDHHC13Q8IUH4 622 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 ZNF276Q8N554 614 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 ACAT2Q9BWD1 397 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 TRIM45Q9H8W5 580 aaPredicted RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 AP4B1Q9Y6B7 739 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 MYH9P35579 1960 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 C15orf38-AP3S2A0A0A6YYH1 394 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 CCL16O15467 120 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 OTCP00480 354 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 CNPP09543 421 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 ITPKAP23677 461 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 HNF4AP41235 474 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 GALNT2Q10471 571 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 CCDC85BQ15834 202 aaPredicted RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 METTL21CQ5VZV1 264 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 ARPINQ7Z6K5 226 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 RALGPS2Q86X27 583 aaPredicted RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 RELL1Q8IUW5 271 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 UTP15Q8TED0 518 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 CIB1Q99828 191 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 PCDH12Q9NPG4 1184 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.23■□□□□ 0.19
CUX1-213ENST00000549414 FBXO10Q9UK96 956 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 DHRS12A0PJE2 317 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 IFRD1O00458 451 aaPredicted RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 SLC7A4O43246 635 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 MAGEC1O60732 1142 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 WDR47O94967 919 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 GJA1P17302 382 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 DDX5P17844 614 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 PLCL1Q15111 1095 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 TRIB2Q92519 343 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 LPGAT1Q92604 370 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 C9orf16Q9BUW7 83 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 TEX12Q9BXU0 123 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 TLE6Q9H808 572 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 CD84Q9UIB8 345 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 PEX2P28328 305 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 HTR7P34969 479 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 MAPK8P45983 427 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 MAMDC4Q6UXC1 1216 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 SERPINA13PQ6UXR4 307 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 ZBTB46Q86UZ6 589 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 PHTF2Q8N3S3 785 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 SIDT2Q8NBJ9 832 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 MIEF2Q96C03 454 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 MPP4Q96JB8 637 aa16.23■□□□□ 0.19
CUX1-213ENST00000549414 NOL11Q9H8H0 719 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 NKX1-2Q9UD57 310 aaPredicted RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 EIF2B4Q9UI10 523 aaKnown RBP16.23■□□□□ 0.19
CUX1-213ENST00000549414 FAM149AA5PLN7 773 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 SNAP91O60641 907 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 SLC22A3O75751 556 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 KCNH1O95259 989 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 CHN2P52757 468 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 CDH4P55283 916 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 CLCQ05315 142 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 SMARCB1Q12824 385 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 SGCGQ13326 291 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 SPESP1Q6UW49 350 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 BRSK1Q8TDC3 778 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 ZNF778Q96MU6 729 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 RIBC2Q9H4K1 309 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 FGBP02675 491 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 AFF1P51825 1210 aaKnown RBP16.22■□□□□ 0.19
CUX1-213ENST00000549414 SLC18A1P54219 525 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 CYP4F8P98187 520 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 TMEM132CQ8N3T6 1108 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 OR10T2Q8NGX3 314 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 CSGALNACT1Q8TDX6 532 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 WDR60Q8WVS4 1066 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 OTUB1Q96FW1 271 aaPredicted RBP16.22■□□□□ 0.19
CUX1-213ENST00000549414 POMPQ9Y244 141 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 TBX10O75333 385 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 IDO1P14902 403 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 MAPKAPK2P49137 400 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 ACAP2Q15057 778 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 ATG10Q9H0Y0 220 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 MCM8Q9UJA3 840 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 ANKRD12Q6UB98 2062 aa16.22■□□□□ 0.19
CUX1-213ENST00000549414 GLYATL1P3A0A0U1RQE8 302 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 ZBTB42B2RXF5 422 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 PIP5K1BO14986 540 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 DLX3O60479 287 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 OR4F21O95013 312 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 ALFQ53S48 1182 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 MFSD4BQ5TF39 518 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 RAET1GQ6H3X3 334 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 DPY19L2P1Q6NXN4 242 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 AAGABQ6PD74 315 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 PAQR3Q6TCH7 311 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 CAMK1DQ8IU85 385 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 SPPL2CQ8IUH8 684 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 FCRL3Q96P31 734 aaPredicted RBP16.21■□□□□ 0.19
CUX1-213ENST00000549414 SRRDQ9UH36 339 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 PSMD13Q9UNM6 376 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 Q9Y3F1 56 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.21■□□□□ 0.19
CUX1-213ENST00000549414 NIPSNAP2O75323 286 aa16.21■□□□□ 0.19
CUX1-213ENST00000549414 GLUD1P00367 558 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms