RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 FAM83DQ9H4H8 585 aa11.76□□□□□ -0.53
HDAC4-216ENST00000544989 RMI1Q9H9A7 625 aa11.76□□□□□ -0.53
HDAC4-216ENST00000544989 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.76□□□□□ -0.531e-6■■■■□ 24.6
HDAC4-216ENST00000544989 HACD3Q9P035 362 aa11.76□□□□□ -0.53
HDAC4-216ENST00000544989 VPS18Q9P253 973 aa11.76□□□□□ -0.53
HDAC4-216ENST00000544989 NFKBIL1Q9UBC1 381 aaPredicted RBP11.76□□□□□ -0.53
HDAC4-216ENST00000544989 SAE1Q9UBE0 346 aaPredicted RBP11.76□□□□□ -0.53
HDAC4-216ENST00000544989 CFAP46Q8IYW2 2715 aa11.76□□□□□ -0.53
HDAC4-216ENST00000544989 ACACAQ13085 2346 aa11.76□□□□□ -0.53
HDAC4-216ENST00000544989 FAM149AA5PLN7 773 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 TRABD2BA6NFA1 517 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 TMX2-CTNND1H3BSU7 103 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 ANXA9O76027 345 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 PNLIPP16233 465 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 HLA-DPA1P20036 260 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 GEMP55040 296 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 ADCY2Q08462 1091 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 GALNT3Q14435 633 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 PRPSAP1Q14558 356 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 PCSK7Q16549 785 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 HENMT1Q5T8I9 393 aaKnown RBP11.75□□□□□ -0.53
HDAC4-216ENST00000544989 GUSBP11Q6P575 273 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 OGFOD3Q6PK18 319 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 RBM44Q6ZP01 1051 aaKnown RBP11.75□□□□□ -0.53
HDAC4-216ENST00000544989 PROSER1Q86XN7 944 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 LSMEM2Q8N112 164 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 FAM46DQ8NEK8 389 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 COX14Q96I36 57 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 RIOK2Q9BVS4 552 aaKnown RBP11.75□□□□□ -0.53
HDAC4-216ENST00000544989 GPR63Q9BZJ6 419 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 TMEM168Q9H0V1 697 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 GULP1Q9UBP9 304 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 RSPH14Q9UHP6 348 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 CD84Q9UIB8 345 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 SUFUQ9UMX1 484 aa11.75□□□□□ -0.53
HDAC4-216ENST00000544989 AAR2Q9Y312 384 aaKnown RBP11.75□□□□□ -0.53
HDAC4-216ENST00000544989 PLXNB3Q9ULL4 1909 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 LOC285095A0A1B0GVY8 99 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 SRRM3A6NNA2 597 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 TAF4O00268 1085 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 NUDT21O43809 227 aaKnown RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 PPFIA2O75334 1257 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 PMPCBO75439 489 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 MT-CYBP00156 380 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 SOD1P00441 154 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 CAPNS1P04632 268 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 FGF1P05230 155 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 GLB1P16278 677 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 NFKB1P19838 968 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 CD68P34810 354 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 GNPDA1P46926 289 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 WNT3AP56704 352 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 EIF3EP60228 445 aaKnown RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 OTUD4Q01804 1114 aaKnown RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 RTP5Q14D33 572 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 LLGL1Q15334 1064 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 ZNF569Q5MCW4 686 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 DARS2Q6PI48 645 aaKnown RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 LYSMD3Q7Z3D4 306 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 TMC3Q7Z5M5 1100 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 GALNT13Q8IUC8 556 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 ZNF567Q8N184 647 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 PELI3Q8N2H9 469 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 KYQ8NBH2 561 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 GPR156Q8NFN8 814 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 SPATA22Q8NHS9 363 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 ACTL9Q8TC94 416 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 DTX3LQ8TDB6 740 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 SCAMP4Q969E2 229 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 PLEKHG4BQ96PX9 1271 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 OR2M4Q96R27 311 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 DESI2Q9BSY9 194 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 FSD1LQ9BXM9 530 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 GBA3Q9H227 469 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 DPEP2Q9H4A9 486 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 MRPL40Q9NQ50 206 aaKnown RBP11.74□□□□□ -0.53
HDAC4-216ENST00000544989 SIRPGQ9P1W8 387 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 APPL1Q9UKG1 709 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 ZNF711Q9Y462 761 aa11.74□□□□□ -0.53
HDAC4-216ENST00000544989 LRP4O75096 1905 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 CELA2BP08218 269 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-216ENST00000544989 RBP3P10745 1247 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 PYGMP11217 842 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 SLC2A4P14672 509 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 RBL1P28749 1068 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 HMGCLP35914 325 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 ADCY8P40145 1251 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 SPIDRQ14159 915 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 PTPRRQ15256 657 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 SLC1A5Q15758 541 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 CLPPQ16740 277 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-216ENST00000544989 C14orf28Q4W4Y0 310 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 CERCAMQ5T4B2 595 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 KDELC1Q6UW63 502 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 KDELC2Q7Z4H8 507 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 TRAM1L1Q8N609 369 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 AVL9Q8NBF6 648 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 ALG3Q92685 438 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 HES6Q96HZ4 224 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 ALS2CR12Q96Q35 445 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms