RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SPATA16Q9BXB7 569 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 FKBPLQ9UIM3 349 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 FNDC3AQ9Y2H6 1198 aaKnown RBP17.04■□□□□ 0.32
LIG1-204ENST00000542460 FANCMQ8IYD8 2048 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 H0Y8X5 98 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 NMBRP28336 390 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 RABIFP47224 123 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 PFN3P60673 137 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 YPEL5P62699 121 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 XIAPP98170 497 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 PDIA2Q13087 525 aaKnown RBP17.03■□□□□ 0.32
LIG1-204ENST00000542460 HLTFQ14527 1009 aaKnown RBP eCLIP17.03■□□□□ 0.32
LIG1-204ENST00000542460 FAM151BQ6UXP7 276 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 KYAT3Q6YP21 454 aaKnown RBP17.03■□□□□ 0.32
LIG1-204ENST00000542460 TMEM135Q86UB9 458 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 PELI3Q8N2H9 469 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 CEP76Q8TAP6 659 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 SKA1Q96BD8 255 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 TBATAQ96M53 351 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 PHACTR1Q9C0D0 580 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 TREX1Q9NSU2 369 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 MTRF1LQ9UGC7 380 aaKnown RBP17.03■□□□□ 0.32
LIG1-204ENST00000542460 SLC2A6Q9UGQ3 507 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 TEX264Q9Y6I9 313 aa17.03■□□□□ 0.32
LIG1-204ENST00000542460 THADAQ6YHU6 1953 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 A0A1W2PR77 199 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 PROB1E7EW31 1015 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 CCL22O00626 93 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 MAGEC1O60732 1142 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 BANF1O75531 89 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 SRP72O76094 671 aaKnown RBP17.02■□□□□ 0.32
LIG1-204ENST00000542460 SOD1P00441 154 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 LMNAP02545 664 aaKnown RBP17.02■□□□□ 0.32
LIG1-204ENST00000542460 POLBP06746 335 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 RETP07949 1114 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 PGAM1P18669 254 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 ELK3P41970 407 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 CARSP49589 748 aaKnown RBP17.02■□□□□ 0.32
LIG1-204ENST00000542460 ARSDP51689 593 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 ITGA9Q13797 1035 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 TEAD4Q15561 434 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 CHRNA6Q15825 494 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 DUOXA1Q1HG43 343 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 ADAMTSL4Q6UY14 1074 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 Q6ZSR6 202 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 ZNF398Q8TD17 642 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 UBXN4Q92575 508 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 HDAC10Q969S8 669 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 MFSD3Q96ES6 412 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 KLHDC7BQ96G42 594 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 APOOQ9BUR5 198 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 TEX101Q9BY14 249 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 TSPYL1Q9H0U9 437 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 ARRDC1-AS1Q9H2J1 176 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 WDR26Q9H7D7 661 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 SUDS3Q9H7L9 328 aaPredicted RBP17.02■□□□□ 0.32
LIG1-204ENST00000542460 RPS6KL1Q9Y6S9 549 aa17.02■□□□□ 0.32
LIG1-204ENST00000542460 ZFHX2Q9C0A1 2572 aaPredicted RBP17.02■□□□□ 0.31
LIG1-204ENST00000542460 FADS2P1A8MWK0 482 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 GAPDHSO14556 408 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 VILLO15195 856 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 USP1O94782 785 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 PRAMEF1O95521 474 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 TTC4O95801 387 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 HOXC4P09017 264 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 THEGLP0DJG4 465 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 PAMP19021 973 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 MC4RP32245 332 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 CSNK1EP49674 416 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 PRAMEP78395 509 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 PEX6Q13608 980 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ANKRD20A4Q4UJ75 823 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ATP13A5Q4VNC0 1218 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 HP1BP3Q5SSJ5 553 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 CES3Q6UWW8 571 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 CEP128Q6ZU80 1094 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 PTAR1Q7Z6K3 402 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 DCP2Q8IU60 420 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 IGDCC3Q8IVU1 814 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ZBED8Q8IZ13 594 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 OR13H1Q8NG92 308 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 RUBCNQ92622 972 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 PHPT1Q9NRX4 125 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 ZC3H7BQ9UGR2 993 aaKnown RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 GMEB2Q9UKD1 530 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 OR1A2Q9Y585 309 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 SLC30A1Q9Y6M5 507 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 CCDC162PA2VCL2 907 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 TLR4O00206 839 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 WNT1P04628 370 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ITGALP20701 1170 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ECHS1P30084 290 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 MPLP40238 635 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 C21orf59P57076 290 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 NFATC2Q13469 925 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 GPR33Q49SQ1 333 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 KIAA0930Q6ICG6 404 aaPredicted RBP17.01■□□□□ 0.31
LIG1-204ENST00000542460 KDM7AQ6ZMT4 941 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 ASCL5Q7RTU5 278 aa17.01■□□□□ 0.31
LIG1-204ENST00000542460 SNX20Q7Z614 316 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms