RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CIDEBQ9UHD4 219 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 EIF2B4Q9UI10 523 aaKnown RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 ZMYM5Q9UJ78 669 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 AGO1Q9UL18 857 aaKnown RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 CLEC4EQ9ULY5 219 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 MED16Q9Y2X0 877 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 SAC3D1A6NKF1 404 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 TRPC5OSA6NMA1 111 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 H0Y626 953 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 AP3B1O00203 1094 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 ECI2O75521 394 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 RBP1P09455 135 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 ALDH7A1P49419 539 aaKnown RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 RBBP7Q16576 425 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 SETMARQ53H47 684 aaPredicted RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 MRNIPQ6NTE8 343 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 OR52B6Q8NGF0 335 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 SERPINI1Q99574 410 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 VN1R3Q9BXE9 311 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 VTI1BQ9UEU0 232 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 SQORQ9Y6N5 450 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 H2AFYO75367 372 aaKnown RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 RPP40O75818 363 aaKnown RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 CLIC3O95833 236 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 UQCRBP14927 111 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 IMPDH1P20839 514 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 TM4SF4P48230 202 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 RABL3Q5HYI8 236 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 SPPL2CQ8IUH8 684 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 PGAM4Q8N0Y7 254 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 ARL14EPQ8N8R7 260 aaPredicted RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 EME1Q96AY2 570 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 ARNT2Q9HBZ2 717 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 VPS28Q9UK41 221 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 A0A0J9YYE9 177 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 SMAD6O43541 496 aaKnown RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 TBL1XO60907 577 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 SEC24DO94855 1032 aaPredicted RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 TRAF2Q12933 501 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 ZNF177Q13360 481 aaPredicted RBP16.84■□□□□ 0.29
USP28-208ENST00000540438 BRSK1Q8TDC3 778 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 PPP2R3CQ969Q6 453 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 APOL5Q9BWW9 433 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 DNMT3LQ9UJW3 386 aa16.84■□□□□ 0.29
USP28-208ENST00000540438 IGLV3-10A0A075B6K4 115 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 NRG2O14511 850 aaPredicted RBP16.83■□□□□ 0.29
USP28-208ENST00000540438 NPHS1O60500 1241 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 STC2O76061 302 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 SELPP16109 830 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 CAPN3P20807 821 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 STC1P52823 247 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 ZNF33AQ06730 810 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 FBXO39Q8N4B4 442 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 TSPAN17Q96FV3 270 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 PRPF18Q99633 342 aaKnown RBP16.83■□□□□ 0.29
USP28-208ENST00000540438 SLC29A1Q99808 456 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 PSMD13Q9UNM6 376 aa16.83■□□□□ 0.29
USP28-208ENST00000540438 FFAR3O14843 346 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 GPR42O15529 346 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 CRTAMO95727 393 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 SNRPB2P08579 225 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 FRG1Q14331 258 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 PELI3Q8N2H9 469 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 MTFMTQ96DP5 389 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 DEFB118Q96PH6 123 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 SOX17Q9H6I2 414 aaPredicted RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 EML4Q9HC35 981 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 AFF4Q9UHB7 1163 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 AP4B1Q9Y6B7 739 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 C15orf38-AP3S2A0A0A6YYH1 394 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 ZNF840PA6NDX5 716 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 CNPP09543 421 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 MBL2P11226 248 aaPredicted RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 HERVK_113P63132 956 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 SMAD3P84022 425 aaKnown RBP16.83■□□□□ 0.28
USP28-208ENST00000540438 AAGABQ6PD74 315 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 MBOAT1Q6ZNC8 495 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 ARPINQ7Z6K5 226 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 SCML4Q8N228 414 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 EID2BQ96D98 161 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 LINGO1Q96FE5 620 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 ERVK-6Q9BXR3 956 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 CD274Q9NZQ7 290 aa16.83■□□□□ 0.28
USP28-208ENST00000540438 SCN5AQ14524 2016 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 DRGXA6NNA5 263 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 E5RI56 91 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 NRP2O60462 931 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 TRIM16O95361 564 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 NDST3O95803 873 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 CYP4F8P98187 520 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 PARP15Q460N3 678 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 TEX26Q8N6G2 289 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 CANT1Q8WVQ1 401 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 GRIP2Q9C0E4 1043 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 COQ10BQ9H8M1 238 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 PRM3Q9NNZ6 103 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 ARHGEF37A1IGU5 675 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 PRRG1O14668 218 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 AZIN1O14977 448 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms