RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 WDR49Q8IV35 697 aa10.86□□□□□ -0.67
CLSTN3-207ENST00000537408 AQP12AQ8IXF9 295 aa10.86□□□□□ -0.67
CLSTN3-207ENST00000537408 KCTD17Q8N5Z5 321 aa10.86□□□□□ -0.67
CLSTN3-207ENST00000537408 C6orf62Q9GZU0 229 aaPredicted RBP10.86□□□□□ -0.67
CLSTN3-207ENST00000537408 NUAK2Q9H093 628 aa10.86□□□□□ -0.67
CLSTN3-207ENST00000537408 WDR70Q9NW82 654 aa10.86□□□□□ -0.67
CLSTN3-207ENST00000537408 FAM149AA5PLN7 773 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 CARNS1A5YM72 827 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ALDH1A2O94788 518 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PRKCBP05771 671 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 HTR1BP28222 390 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ELK4P28324 431 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 POLR2IP36954 125 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 RPL14P50914 215 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 YWHAEP62258 255 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ZNF45Q02386 682 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PPP3CAQ08209 521 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 TOR2AQ5JU69 321 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PNCKQ6P2M8 343 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 AMIGO1Q86WK6 493 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 LGI2Q8N0V4 545 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 MUL1Q969V5 352 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ZHX1-C8orf76Q96EF9 292 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PHOX2BQ99453 314 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 MMP27Q9H306 513 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PDE10AQ9Y233 779 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PCDHB7Q9Y5E2 793 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 TPP1O14773 563 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 XYLBO75191 536 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 MAP3K6O95382 1288 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 LDLRP01130 860 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PDGFAP04085 211 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 TRAPPC2P0DI81 140 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 TRAPPC2BP0DI82 140 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ERP29P30040 261 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 FMO4P31512 558 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ZNF697Q5TEC3 545 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 SHEQ5VZ18 495 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ZNF517Q6ZMY9 492 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 IL17RDQ8NFM7 739 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 SLCO4A1Q96BD0 722 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 CPXM1Q96SM3 734 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 C2orf40Q9H1Z8 148 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ERVMER34-1Q9H9K5 563 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 ACOXLQ9NUZ1 547 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 GLTPQ9NZD2 209 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 EMC3Q9P0I2 261 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PAK5Q9P286 719 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 FAM50BQ9Y247 325 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 A8MV72 311 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 FAM86B1E9PN63 330 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PLD2O14939 933 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 PAHP00439 452 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 FAM86B2P0C5J1 330 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 CSH1P0DML2 217 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 CSH2P0DML3 217 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 CYP2A7P20853 494 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 TGM2P21980 687 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 MMP8P22894 467 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 DPP6P42658 865 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 HTR3AP46098 478 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 NUMBP49757 651 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 CLK1P49759 484 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 SLC12A2P55011 1212 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 GDF10P55107 478 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 MAMLD1Q13495 774 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 TTC23Q5W5X9 447 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 R3HCC1LQ7Z5L2 792 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 UBQLNLQ8IYU4 475 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 NDNFQ8TB73 568 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 RAB6BQ9NRW1 208 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 RAP2CQ9Y3L5 183 aa10.85□□□□□ -0.67
CLSTN3-207ENST00000537408 HMX3A6NHT5 357 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 TRIM24O15164 1050 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 TRIM13O60858 407 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 GABARAPO95166 117 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 IL18RAPO95256 599 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 CALB1P05937 261 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 ZNF286BP0CG31 522 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 HOXB1P14653 301 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 YWHAZP63104 245 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 JAG1P78504 1218 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 PRKAA1Q13131 559 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 PPP1R3AQ16821 1122 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 ZNF792Q3KQV3 632 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 KCNT1Q5JUK3 1230 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 CELF3Q5SZQ8 465 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 DENND5AQ6IQ26 1287 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 DNAJC24Q6P3W2 148 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 GLB1LQ6UWU2 654 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 ARSKQ6UWY0 536 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 UNC5BQ8IZJ1 945 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 TMC2Q8TDI7 906 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 TMEM143Q96AN5 459 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 CYP26B1Q9NR63 512 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 PLSCR3Q9NRY6 295 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 I3L521 148 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 CHRNA1P02708 482 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 SNHG28P0DPA3 235 aa10.84□□□□□ -0.67
CLSTN3-207ENST00000537408 SPNP16150 400 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms