RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	NOTCH2	Q04721	2471 aa		12.36	□□□□□ -0.43
CAPN1-223	ENST00000533079	ANKRD62	A6NC57	917 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079		A8MU76	341 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	TOX3	O15405	576 aa	Predicted RBP	12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	HTRA2	O43464	458 aa	Predicted RBP	12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	CP	P00450	1065 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	SERPINC1	P01008	464 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	ATP1A3	P13637	1013 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	UCHL3	P15374	230 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	ETV3	P41162	512 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	CDR2	Q01850	454 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	PYCR3	Q53H96	274 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	SNAP47	Q5SQN1	464 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	TMCO4	Q5TGY1	634 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	DPY19L2P1	Q6NXN4	242 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	ADAMTSL4	Q6UY14	1074 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	GALNT13	Q8IUC8	556 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	PLXDC1	Q8IUK5	500 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	CBARP	Q8N350	705 aa	Predicted RBP	12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	C3orf20	Q8ND61	904 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	STAMBPL1	Q96FJ0	436 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	C11orf70	Q9BRQ4	267 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	HERPUD2	Q9BSE4	406 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	SLC29A3	Q9BZD2	475 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	SP110	Q9HB58	689 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	LIMA1	Q9UHB6	759 aa	Known RBP	12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	TLK1	Q9UKI8	766 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	MAP4K5	Q9Y4K4	846 aa		12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	PCDHGA9	Q9Y5G4	932 aa	Known RBP	12.35	□□□□□ -0.43
CAPN1-223	ENST00000533079	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SPTBN1	Q01082	2364 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079		A0A1B0GTH6	734 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	FAM170A	A1A519	330 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	GOLGA6C	A6NDK9	693 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	GOLGA6B	A6NDN3	693 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	LILRA5	A6NI73	299 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079		A8MX80	341 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	C21orf140	B9A014	251 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	CCP110	O43303	1012 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	ZNF500	O60304	480 aa	Predicted RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SEMA7A	O75326	666 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SORBS2	O94875	1100 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	MAP3K6	O95382	1288 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	MT-ND3	P03897	115 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	GOLGA6D	P0CG33	693 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	F8A1	P23610	371 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	HSPA9	P38646	679 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	GARS	P41250	739 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	NSF	P46459	744 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	PAPOLA	P51003	745 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SCNN1B	P51168	640 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	ZNF143	P52747	638 aa	Predicted RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	IL10RB	Q08334	325 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SEMA5A	Q13591	1074 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	ERV3-1	Q14264	604 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	IL11RA	Q14626	422 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	VWA3B	Q502W6	1294 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	KLHDC7A	Q5VTJ3	777 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	USP45	Q70EL2	814 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	APTX	Q7Z2E3	356 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	PHLDB2	Q86SQ0	1253 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SLC9B2	Q86UD5	537 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	ZNF761	Q86XN6	746 aa	Predicted RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	PTCD2	Q8WV60	388 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	NCSTN	Q92542	709 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	ZNF599	Q96NL3	588 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	STK33	Q9BYT3	514 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	SAMSN1	Q9NSI8	373 aa	Known RBP	12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	GOLGA6A	Q9NYA3	693 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	PHTF1	Q9UMS5	762 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	NBAS	A2RRP1	2371 aa		12.34	□□□□□ -0.43
CAPN1-223	ENST00000533079	LRBA	P50851	2863 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	KIR2DS5	A0A0G2JLQ3	304 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079		A0A0G2JNG1	304 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	KIR2DS3	K7RE56	304 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	LRCH4	O75427	683 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	CREG1	O75629	220 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	C9	P02748	559 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	CALB1	P05937	261 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	FURIN	P09958	794 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	LHCGR	P22888	699 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	EEF1G	P26641	437 aa	Known RBP	12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	DCT	P40126	519 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	GPR1	P46091	355 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	POLD2	P49005	469 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	PGD	P52209	483 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	FMO1	Q01740	532 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	PTP4A2	Q12974	167 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	KIR2DS5	Q14953	304 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	TPD52L1	Q16890	204 aa	Predicted RBP	12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	FILIP1L	Q4L180	1135 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	RALGPS1	Q5JS13	557 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	SCYL2	Q6P3W7	929 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	WDR59	Q6PJI9	974 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	DOK6	Q6PKX4	331 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	ZNF765	Q7L2R6	523 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	HSD11B1L	Q7Z5J1	315 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	NLRP8	Q86W28	1048 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	HPS6	Q86YV9	775 aa		12.33	□□□□□ -0.44
CAPN1-223	ENST00000533079	VSTM4	Q8IW00	320 aa		12.33	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms