RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ANKS6Q68DC2 871 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 TXNRD3NBQ6F5E7 133 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 MARK2Q7KZI7 788 aaKnown RBP23.43■■□□□ 1.34
CPSF1-202ENST00000527827 FAM129CQ86XR2 697 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 PTRH1Q86Y79 214 aaKnown RBP23.43■■□□□ 1.34
CPSF1-202ENST00000527827 ZNF564Q8TBZ8 553 aaPredicted RBP23.43■■□□□ 1.34
CPSF1-202ENST00000527827 SPRY4Q9C004 299 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 NT5MQ9NPB1 228 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.43■■□□□ 1.34
CPSF1-202ENST00000527827 AIPL1Q9NZN9 384 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 MYO1AQ9UBC5 1043 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 RARAP10276 462 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 PRKCIP41743 596 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 IHHQ14623 411 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 CHCHD2P9Q5T1J5 151 aaPredicted RBP23.42■■□□□ 1.34
CPSF1-202ENST00000527827 ZNF765Q7L2R6 523 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 NLRP8Q86W28 1048 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 SFRP1Q8N474 314 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 TEX26Q8N6G2 289 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 NSMCE1Q8WV22 266 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 COX14Q96I36 57 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 RTN4Q9NQC3 1192 aaKnown RBP23.42■■□□□ 1.34
CPSF1-202ENST00000527827 PILRAQ9UKJ1 303 aa23.42■■□□□ 1.34
CPSF1-202ENST00000527827 PCYT1BQ9Y5K3 369 aaPredicted RBP23.42■■□□□ 1.34
CPSF1-202ENST00000527827 ZNF891A8MT65 544 aaPredicted RBP23.41■■□□□ 1.34
CPSF1-202ENST00000527827 RAB15P59190 212 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 LRP8Q14114 963 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 ARHGAP22Q7Z5H3 698 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 GALNT13Q8IUC8 556 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 NRSN1Q8IZ57 195 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 RTP4Q96DX8 246 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 AHCYL2Q96HN2 611 aaKnown RBP23.41■■□□□ 1.34
CPSF1-202ENST00000527827 SLC45A3Q96JT2 553 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 SLC38A3Q99624 504 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 PCDH18Q9HCL0 1135 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 MRPL47Q9HD33 250 aaKnown RBP23.41■■□□□ 1.34
CPSF1-202ENST00000527827 TUBD1Q9UJT1 453 aa23.41■■□□□ 1.34
CPSF1-202ENST00000527827 A0A0J9YYE9 177 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 DNAJC6O75061 913 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 MAP3K6O95382 1288 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 TRBC1P01850 177 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 SERPINB6P35237 376 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 CCR10P46092 362 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 STC1P52823 247 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 MC2RQ01718 297 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 AOPEPQ8N6M6 819 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 OR10G6Q8NH81 332 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 TEFMQ96QE5 360 aaKnown RBP23.4■■□□□ 1.34
CPSF1-202ENST00000527827 RIOK2Q9BVS4 552 aaKnown RBP23.4■■□□□ 1.34
CPSF1-202ENST00000527827 ZMYND15Q9H091 742 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 NBASA2RRP1 2371 aa23.4■■□□□ 1.34
CPSF1-202ENST00000527827 A8MU76 341 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 INPP4BO15327 924 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 NKX2-8O15522 239 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 DUX1O43812 170 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 MYBL1P10243 752 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 ZNF30P17039 623 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 SKIDA1Q1XH10 827 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 SNAP47Q5SQN1 464 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 WDR74Q6RFH5 385 aaPredicted RBP23.39■■□□□ 1.33
CPSF1-202ENST00000527827 NDUFAF2Q8N183 169 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 EXD1Q8NHP7 514 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 TEKT4Q8WW24 435 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 TRIM11Q96F44 468 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 CATSPER2Q96P56 530 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 CTRCQ99895 268 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 ISCUQ9H1K1 167 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 EPN3Q9H201 632 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 PRKAB1Q9Y478 270 aa23.39■■□□□ 1.33
CPSF1-202ENST00000527827 LOC101059948A0A1B0GTJ6 334 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 CAPN5O15484 640 aaPredicted RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 PYGLP06737 847 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 IL4RP24394 825 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 SLC25A11Q02978 314 aaKnown RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 KLHL30Q0D2K2 578 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 TIPARPQ7Z3E1 657 aaKnown RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 NLGN4XQ8N0W4 816 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 NLGN4YQ8NFZ3 816 aaPredicted RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 POLR1EQ9GZS1 481 aaKnown RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 GPN2Q9H9Y4 310 aaPredicted RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 SARS2Q9NP81 518 aaKnown RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 TBC1D29Q9UFV1 150 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 ZNHIT2Q9UHR6 403 aa23.38■■□□□ 1.33
CPSF1-202ENST00000527827 CNOT6Q9ULM6 557 aaKnown RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 OAS3Q9Y6K5 1087 aaKnown RBP23.38■■□□□ 1.33
CPSF1-202ENST00000527827 ASMTLO95671 621 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 ATP1A1P05023 1023 aaKnown RBP23.37■■□□□ 1.33
CPSF1-202ENST00000527827 SKILP12757 684 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 MAP4P27816 1152 aaKnown RBP23.37■■□□□ 1.33
CPSF1-202ENST00000527827 PPM1FP49593 454 aaPredicted RBP23.37■■□□□ 1.33
CPSF1-202ENST00000527827 DSC2Q02487 901 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 HHEXQ03014 270 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 ITKQ08881 620 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 MMRN1Q13201 1228 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 PIGHQ14442 188 aaPredicted RBP23.37■■□□□ 1.33
CPSF1-202ENST00000527827 ALG1LQ6GMV1 187 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 LRRC49Q8IUZ0 686 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 MAML1Q92585 1016 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 WDR24Q96S15 920 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 APMAPQ9HDC9 416 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms