RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 HEMGNQ9BXL5 484 aa20.5■□□□□ 0.87
VPS28-206ENST00000526734 TRABDQ9H4I3 376 aa20.5■□□□□ 0.87
VPS28-206ENST00000526734 RMI1Q9H9A7 625 aa20.5■□□□□ 0.87
VPS28-206ENST00000526734 APPL1Q9UKG1 709 aa20.5■□□□□ 0.87
VPS28-206ENST00000526734 AMFRQ9UKV5 643 aa20.5■□□□□ 0.87
VPS28-206ENST00000526734 ZNF711Q9Y462 761 aa20.5■□□□□ 0.87
VPS28-206ENST00000526734 TMX2-CTNND1H3BSU7 103 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 H7C0C1 242 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 ZW10O43264 779 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 NUDT21O43809 227 aaKnown RBP20.49■□□□□ 0.87
VPS28-206ENST00000526734 NOBOXO60393 691 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 PMPCBO75439 489 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 STK10O94804 968 aaKnown RBP20.49■□□□□ 0.87
VPS28-206ENST00000526734 TJP3O95049 919 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 MT-CYBP00156 380 aaPredicted RBP20.49■□□□□ 0.87
VPS28-206ENST00000526734 CD68P34810 354 aaPredicted RBP20.49■□□□□ 0.87
VPS28-206ENST00000526734 ATP5OP48047 213 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 MPP3Q13368 585 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 TCEA2Q15560 299 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 ITPRIPL1Q6GPH6 555 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 DOK6Q6PKX4 331 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 B4GALNT4Q76KP1 1039 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 PEX26Q7Z412 305 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 TMC3Q7Z5M5 1100 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 GALNT13Q8IUC8 556 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 ZNF567Q8N184 647 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 SPC24Q8NBT2 197 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 PPP1R2P1Q96PQ5 205 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 ZSCAN5AQ9BUG6 496 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 GPR63Q9BZJ6 419 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 HACD3Q9P035 362 aa20.49■□□□□ 0.87
VPS28-206ENST00000526734 LOC285095A0A1B0GVY8 99 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 B4DGG1 531 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 GPR89AB7ZAQ6 455 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 NTN3O00634 580 aaPredicted RBP20.48■□□□□ 0.87
VPS28-206ENST00000526734 DXOO77932 396 aaKnown RBP20.48■□□□□ 0.87
VPS28-206ENST00000526734 GPR89BP0CG08 455 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 HLA-DPA1P20036 260 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 ACTN2P35609 894 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 ADCY8P40145 1251 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 LSSP48449 732 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 WNT3AP56704 352 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 HLTFQ14527 1009 aaKnown RBP eCLIP20.48■□□□□ 0.87
VPS28-206ENST00000526734 ZNF569Q5MCW4 686 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 KDELC1Q6UW63 502 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 RNF10Q8N5U6 811 aaKnown RBP20.48■□□□□ 0.87
VPS28-206ENST00000526734 CCL4L1Q8NHW4 92 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 ACTL9Q8TC94 416 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 WDR24Q96S15 920 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 AGAP2Q99490 1192 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 TSGA10Q9BZW7 698 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 POLR1BQ9H9Y6 1135 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 TAAR2Q9P1P5 351 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 RSPH14Q9UHP6 348 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 RAXQ9Y2V3 346 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 PCDHB1Q9Y5F3 818 aa20.48■□□□□ 0.87
VPS28-206ENST00000526734 SPEGQ15772 3267 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 MACROD2A1Z1Q3 448 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 GOLGA6L9A6NEM1 432 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 USP12O75317 370 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 ANXA9O76027 345 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 ASMTLO95671 621 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 FUCA1P04066 466 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 MLLT3P42568 568 aaPredicted RBP20.47■□□□□ 0.87
VPS28-206ENST00000526734 POLD2P49005 469 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 CTBSQ01459 385 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 OTUD4Q01804 1114 aaKnown RBP20.47■□□□□ 0.87
VPS28-206ENST00000526734 PYCR3Q53H96 274 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 ZDHHC20Q5W0Z9 365 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 IGF2-ASQ6U949 168 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 KDELC2Q7Z4H8 507 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 C17orf82Q86X59 251 aaPredicted RBP20.47■□□□□ 0.87
VPS28-206ENST00000526734 NRROSQ86YC3 692 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 TRAM1L1Q8N609 369 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 TTC13Q8NBP0 860 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 SNIP1Q8TAD8 396 aaKnown RBP20.47■□□□□ 0.87
VPS28-206ENST00000526734 ZDHHC1Q8WTX9 485 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 ALG3Q92685 438 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 GFM1Q96RP9 751 aaKnown RBP20.47■□□□□ 0.87
VPS28-206ENST00000526734 GBA3Q9H227 469 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 SUDS3Q9H7L9 328 aaPredicted RBP20.47■□□□□ 0.87
VPS28-206ENST00000526734 TMEM98Q9Y2Y6 226 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 GPSM3Q9Y4H4 160 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 APC2O95996 2303 aa20.47■□□□□ 0.87
VPS28-206ENST00000526734 ACACAQ13085 2346 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 A0A087WV48 116 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 INPP4BO15327 924 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 BRINP1O60477 761 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 RBL1P28749 1068 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 GEMP55040 296 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 EIF3EP60228 445 aaKnown RBP20.46■□□□□ 0.87
VPS28-206ENST00000526734 CLPPQ16740 277 aaPredicted RBP20.46■□□□□ 0.87
VPS28-206ENST00000526734 TRIM74Q86UV6 250 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 CCNJLQ8IV13 435 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 DTX3LQ8TDB6 740 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 ZNF578Q96N58 590 aaPredicted RBP20.46■□□□□ 0.87
VPS28-206ENST00000526734 PLEKHG4BQ96PX9 1271 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 SPATA16Q9BXB7 569 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 FSD1LQ9BXM9 530 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 CARD9Q9H257 536 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms