RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TM4SF4P48230 202 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 SLC11A2P49281 568 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 KCNQ1P51787 676 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 CDH4P55283 916 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 MYBPC1Q00872 1141 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 CLCQ05315 142 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 SPATS1Q496A3 300 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 COQ5Q5HYK3 327 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 PAQR3Q6TCH7 311 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 CYP2R1Q6VVX0 501 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 GLT6D1Q7Z4J2 308 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 RETREG3Q86VR2 466 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 NKAPQ8N5F7 415 aaKnown RBP21.15■□□□□ 0.98
VPS28-205ENST00000526204 OR2T34Q8NGX1 318 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 OR2T3Q8NH03 318 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 DDI1Q8WTU0 396 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.15■□□□□ 0.98
VPS28-205ENST00000526204 RMDN1Q96DB5 314 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 GLT1D1Q96MS3 346 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 OSBPL11Q9BXB4 747 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 TRIM15Q9C019 465 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 CRISPLD1Q9H336 500 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 ARMC1Q9NVT9 282 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 ABCD2Q9UBJ2 740 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 DNMT3LQ9UJW3 386 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 PADI4Q9UM07 663 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 FRMPD3Q5JV73 1810 aa21.15■□□□□ 0.98
VPS28-205ENST00000526204 H7C4K7 107 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 PFDN6O15212 129 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 PYGLP06737 847 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 EEF1DP29692 281 aaKnown RBP21.14■□□□□ 0.98
VPS28-205ENST00000526204 IKBKEQ14164 716 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 RBBP5Q15291 538 aaKnown RBP21.14■□□□□ 0.98
VPS28-205ENST00000526204 RPS6KA2Q15349 733 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 ANKS6Q68DC2 871 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 TSPEARQ8WU66 669 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 TUBGCP3Q96CW5 907 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 B3GALT6Q96L58 329 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 NSUN5Q96P11 429 aaKnown RBP21.14■□□□□ 0.98
VPS28-205ENST00000526204 SEMA6AQ9H2E6 1030 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 ELAC1Q9H777 363 aaKnown RBP21.14■□□□□ 0.98
VPS28-205ENST00000526204 COQ10BQ9H8M1 238 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 MAP10Q9P2G4 905 aa21.14■□□□□ 0.98
VPS28-205ENST00000526204 LRRC14BA6NHZ5 514 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 FAM155AB1AL88 458 aaPredicted RBP21.14■□□□□ 0.97
VPS28-205ENST00000526204 INSIG1O15503 277 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 KDELR3O43731 214 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 FMO4P31512 558 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 ATP5C1P36542 298 aaKnown RBP21.14■□□□□ 0.97
VPS28-205ENST00000526204 FOXA1P55317 472 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 OXCT1P55809 520 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 ELAVL2Q12926 359 aaKnown RBP21.14■□□□□ 0.97
VPS28-205ENST00000526204 DUSP4Q13115 394 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 ADRM1Q16186 407 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 EFL1Q7Z2Z2 1120 aaKnown RBP21.14■□□□□ 0.97
VPS28-205ENST00000526204 GOLM1Q8NBJ4 401 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 OR7D4Q8NG98 312 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 OR4K2Q8NGD2 314 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 TTLL2Q9BWV7 592 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 APPL1Q9UKG1 709 aa21.14■□□□□ 0.97
VPS28-205ENST00000526204 TBC1D4O60343 1298 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 CRCPO75575 148 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 VNN2O95498 520 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 HGFP14210 728 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SLC6A4P31645 630 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SCNN1BP51168 640 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 TXNL4AP83876 142 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 GRB7Q14451 532 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 OGFOD2Q6N063 350 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 TXNDC11Q6PKC3 985 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SPATA19Q7Z5L4 167 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SLC39A3Q9BRY0 314 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SPON2Q9BUD6 331 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 C1QTNF3Q9BXJ4 246 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 TUBB1Q9H4B7 451 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 POLG2Q9UHN1 485 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 FAM50BQ9Y247 325 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SPO11Q9Y5K1 396 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 OAS3Q9Y6K5 1087 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 ZFP37Q9Y6Q3 630 aaPredicted RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 TMEM88BA6NKF7 163 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 AQP12BA6NM10 295 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 SLC38A8A6NNN8 435 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 STX16O14662 325 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 CLDN11O75508 207 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 CSPG5O95196 566 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 HSD17B1P14061 328 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 FOXM1Q08050 763 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 BNIP2Q12982 314 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 GRIK2Q13002 908 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 NRF1Q16656 503 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 VPS26BQ4G0F5 336 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 PABPC1LQ4VXU2 614 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 SETMARQ53H47 684 aaPredicted RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 AQP12AQ8IXF9 295 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 ANKFN1Q8N957 763 aa21.13■□□□□ 0.97
VPS28-205ENST00000526204 PPWD1Q96BP3 646 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 PRPF18Q99633 342 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 NUSAP1Q9BXS6 441 aaKnown RBP21.13■□□□□ 0.97
VPS28-205ENST00000526204 PFDN4Q9NQP4 134 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms