RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TMEM121Q9BTD3 319 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 WRAP53Q9BUR4 548 aaKnown RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 SLC13A1Q9BZW2 595 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 TCEAL2Q9H3H9 227 aaPredicted RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 SYNDIG1Q9H7V2 258 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 ASCL3Q9NQ33 180 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 GOLGA6AQ9NYA3 693 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 FAM153AQ9UHL3 310 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 TTC7AQ9ULT0 858 aaPredicted RBP10.13□□□□□ -0.79
VPS28-204ENST00000526054 ZNF148Q9UQR1 794 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 CHKBQ9Y259 395 aa10.13□□□□□ -0.79
VPS28-204ENST00000526054 KALRNO60229 2985 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 GOLGA6L10A0A0M3HER8 536 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 C5orf60A6NFR6 353 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 CAPN8A6NHC0 703 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ERVH48-1M5A8F1 160 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 KLK10O43240 276 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ZNF500O60304 480 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 MMP20O60882 483 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 PMPCBO75439 489 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 GCATO75600 419 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 TCEA3O75764 348 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 MT-CYBP00156 380 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 ANXA6P08133 673 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 PDHA1P08559 390 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ELFN1P0C7U0 828 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 C6P13671 934 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ITIH2P19823 946 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 RBMS1P29558 406 aaKnown RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 STIP1P31948 543 aaKnown RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 GEMP55040 296 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 YPEL5P62699 121 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 PPARDQ03181 441 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 CDK18Q07002 472 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 RALGDSQ12967 914 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 MPP3Q13368 585 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 C1orf61Q13536 156 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 SNX1Q13596 522 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ARHGEF7Q14155 803 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 IRF4Q15306 451 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 SIX1Q15475 284 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 OASLQ15646 514 aaKnown RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 PCSK7Q16549 785 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 CCNG2Q16589 344 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 TAF1BQ53T94 588 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 PERM1Q5SV97 790 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 C6orf132Q5T0Z8 1188 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 FAXCQ5TGI0 409 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 IGF2-ASQ6U949 168 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 SLC35F3Q8IY50 421 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 C17orf53Q8N3J3 647 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 FAM71DQ8N9W8 422 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 TP53I13Q8NBR0 393 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 SPATA22Q8NHS9 363 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 CCDC110Q8TBZ0 833 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ACTRT1Q8TDG2 376 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 TADA1Q96BN2 335 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 GRAMD1AQ96CP6 724 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 SCRN2Q96FV2 425 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 MCCC1Q96RQ3 725 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 WDR24Q96S15 920 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 BOCQ9BWV1 1114 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 FSD1LQ9BXM9 530 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 CPNE5Q9HCH3 593 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 B4GALT6Q9UBX8 382 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 PNMA8BQ9ULN7 279 aaPredicted RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 DOLKQ9UPQ8 538 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 AAR2Q9Y312 384 aaKnown RBP10.12□□□□□ -0.79
VPS28-204ENST00000526054 PPIL1Q9Y3C6 166 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 ENTPD2Q9Y5L3 495 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 RP1P56715 2156 aa10.12□□□□□ -0.79
VPS28-204ENST00000526054 A0A0J9YYE9 177 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 LMO7DNF2Z398 122 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 F5H423 210 aaPredicted RBP10.11□□□□□ -0.79
VPS28-204ENST00000526054 PSMD11O00231 422 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 TOR1BO14657 336 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 HEXIM1O94992 359 aaKnown RBP10.11□□□□□ -0.79
VPS28-204ENST00000526054 NDST3O95803 873 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 IFNB1P01574 187 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 TRBC1P01850 177 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 TSHRP16473 764 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 CTPS1P17812 591 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 PSMB4P28070 264 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 LIG3P49916 1009 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 BLKP51451 505 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 GDF10P55107 478 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 WNT3AP56704 352 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 RHDQ02161 417 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 SPIDRQ14159 915 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 GALNT3Q14435 633 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 IHHQ14623 411 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 QPCTQ16769 361 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 KIF26BQ2KJY2 2108 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 FAM182AQ5T1J6 154 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 ARHGAP40Q5TG30 622 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 PAPD7Q5XG87 772 aaKnown RBP10.11□□□□□ -0.79
VPS28-204ENST00000526054 ESRP1Q6NXG1 681 aaKnown RBP10.11□□□□□ -0.79
VPS28-204ENST00000526054 FOXR1Q6PIV2 292 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 KDELC1Q6UW63 502 aa10.11□□□□□ -0.79
VPS28-204ENST00000526054 ZNF843Q8N446 348 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms