RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ATP6V0A1Q93050 837 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 PERPQ96FX8 193 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 AK8Q96MA6 479 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 TESK2Q96S53 571 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 MAP7D2Q96T17 732 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 PIMREGQ9BSJ6 248 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CRACR2AQ9BSW2 395 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 C1orf21Q9H246 121 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 NDST4Q9H3R1 872 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 HIPK3Q9H422 1215 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 VPS37BQ9H9H4 285 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 ZNF304Q9HCX3 659 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 C20orf141Q9NUB4 165 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 BABAM1Q9NWV8 329 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 HCFC1R1Q9NWW0 138 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 C5AR2Q9P296 337 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 SLCO3A1Q9UIG8 710 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CDH22Q9UJ99 828 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 SLC8A2Q9UPR5 921 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CCL27Q9Y4X3 112 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 TRIM17Q9Y577 477 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 DMRT1Q9Y5R6 373 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 SQORQ9Y6N5 450 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 AP1M2Q9Y6Q5 423 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 EVC2Q86UK5 1308 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 TOPAZ1Q8N9V7 1692 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 A0A0A0MQY5 61 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 TRBV5-7A0A0A0MS05 114 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 A0A0U1RQK1 487 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ZNF320A2RRD8 509 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CBY3A6NI87 242 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 LRRC3CA6NJW4 275 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 C2CD4BA6NLJ0 364 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 LINC01548A6NM66 108 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 FAM157AC9JC47 383 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 K7EPI3 171 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 AP3B1O00203 1094 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CACNB4O00305 520 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 LATS1O95835 1130 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 IL1AP01583 271 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 OPN1MWP04001 364 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 HEXAP06865 529 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 OPN1MW2P0DN77 364 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 OPN1MW3P0DN78 364 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CCNCP24863 283 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 STIP1P31948 543 aaKnown RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 RFC1P35251 1148 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 EIF2DP41214 584 aaKnown RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 MTHFRP42898 656 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 EFNA5P52803 228 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ARSFP54793 590 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ELLP55199 621 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 INHBEP58166 350 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 C21orf58P58505 322 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 STARD6P59095 220 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 HTD2P86397 168 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 MECOMQ03112 1051 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CFHR1Q03591 330 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 YWHAHQ04917 246 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 TMEM115Q12893 351 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 SGCGQ13326 291 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 FHL2Q14192 279 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ALG11Q2TAA5 492 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 EDRF1Q3B7T1 1238 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 KBTBD12Q3ZCT8 623 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 BMP2KLQ5H9B9 411 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 TXNDC8Q6A555 127 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 AAGABQ6PD74 315 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 NCEH1Q6PIU2 408 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CYB5R4Q7L1T6 521 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 IGFN1Q86VF2 1251 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 KIAA2013Q8IYS2 634 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 SEPT1Q8WYJ6 367 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 SHC3Q92529 594 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 INTS12Q96CB8 462 aaKnown RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 ZNF653Q96CK0 615 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CDCA5Q96FF9 252 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 C1orf74Q96LT6 269 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CITED2Q99967 270 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 STRA6Q9BX79 667 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 NCOR1P1Q9H4R4 102 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 THAP9Q9H5L6 903 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ACTR5Q9H9F9 607 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 SNTG1Q9NSN8 517 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 COQ3Q9NZJ6 369 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 CACNG4Q9UBN1 327 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ZMAT5Q9UDW3 170 aaKnown RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 CFAP45Q9UL16 551 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 KCNE2Q9Y6J6 123 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 FAM169AQ9Y6X4 670 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ACEP12821 1306 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 TNS3Q68CZ2 1445 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 PPIP5K1Q6PFW1 1433 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 ITSN1Q15811 1721 aa4.85□□□□□ -1.63
CD44-220ENST00000525688 TRPM3Q9HCF6 1732 aaPredicted RBP4.85□□□□□ -1.63
CD44-220ENST00000525688 EP400Q96L91 3159 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 KAT6AQ92794 2004 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 SSH2Q76I76 1423 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 ARHGEF10O15013 1369 aa4.84□□□□□ -1.63
CD44-220ENST00000525688 USP47Q96K76 1375 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms