RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 GPS1Q13098 491 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 EIF2B5Q13144 721 aaKnown RBP14.19□□□□□ -0.14
NUP54-216ENST00000514901 OLIG2Q13516 323 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 PPP1R7Q15435 360 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 TPSAB1Q15661 275 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 TPRG1LQ5T0D9 272 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 SYDE1Q6ZW31 735 aaPredicted RBP14.19□□□□□ -0.14
NUP54-216ENST00000514901 PIP4P1Q86T03 277 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 PELI3Q8N2H9 469 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 SDR16C5Q8N3Y7 309 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 OR56A4Q8NGH8 313 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 CASS4Q9NQ75 786 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 SPASTQ9UBP0 616 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 KLQ9UEF7 1012 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 NEU2Q9Y3R4 380 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 ARL5AQ9Y689 179 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 CSNK1G3Q9Y6M4 447 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 DGKBQ9Y6T7 804 aa14.19□□□□□ -0.14
NUP54-216ENST00000514901 GOLGA4Q13439 2230 aaKnown RBP14.19□□□□□ -0.14
NUP54-216ENST00000514901 TP53BP1Q12888 1972 aaPredicted RBP14.18□□□□□ -0.14
NUP54-216ENST00000514901 PIAS2O75928 621 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 DGKAP23743 735 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 SPAM1P38567 509 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 HADHAP40939 763 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 MAGEA6P43360 314 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 HK3P52790 923 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 BNIP3Q12983 259 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 TRIP13Q15645 432 aaPredicted RBP14.18□□□□□ -0.14
NUP54-216ENST00000514901 KDM7AQ6ZMT4 941 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 NLRP9Q7RTR0 991 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 PHACTR4Q8IZ21 702 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 FSTL5Q8N475 847 aaPredicted RBP14.18□□□□□ -0.14
NUP54-216ENST00000514901 OR52K1Q8NGK4 314 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 SETD7Q8WTS6 366 aaKnown RBP14.18□□□□□ -0.14
NUP54-216ENST00000514901 COX14Q96I36 57 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 C16orf45Q96MC5 204 aaPredicted RBP14.18□□□□□ -0.14
NUP54-216ENST00000514901 AGAP2Q99490 1192 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 LGR4Q9BXB1 951 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 DDX47Q9H0S4 455 aaKnown RBP14.18□□□□□ -0.14
NUP54-216ENST00000514901 BPIFA1Q9NP55 256 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 IL26Q9NPH9 171 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 APPL1Q9UKG1 709 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 SLC17A4Q9Y2C5 497 aa14.18□□□□□ -0.14
NUP54-216ENST00000514901 TMEM202A6NGA9 273 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 LDB2O43679 373 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 CEACAM5P06731 702 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 CTSEP14091 401 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 TPH1P17752 444 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ADRA1DP25100 572 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ID4P47928 161 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 NPY2RP49146 381 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 IL9RQ01113 521 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ITGA9Q13797 1035 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 SKIDA1Q1XH10 827 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ALG11Q2TAA5 492 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ZNF542PQ5EBM4 170 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ARMC3Q5W041 872 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 ALS2CLQ60I27 953 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 KANSL1Q7Z3B3 1105 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 HID1Q8IV36 788 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 NAXDQ8IW45 347 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 OR4K2Q8NGD2 314 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 RHBDD1Q8TEB9 315 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 STYXQ8WUJ0 223 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 TSACCQ96A04 125 aaPredicted RBP14.17□□□□□ -0.14
NUP54-216ENST00000514901 VPS35Q96QK1 796 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 RANBP9Q96S59 729 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 CDC6Q99741 560 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 FRMD8Q9BZ67 464 aaPredicted RBP14.17□□□□□ -0.14
NUP54-216ENST00000514901 RMI1Q9H9A7 625 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 APOBEC3BQ9UH17 382 aaKnown RBP14.17□□□□□ -0.14
NUP54-216ENST00000514901 KLF15Q9UIH9 416 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 RIMKLBQ9ULI2 386 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 CNOT6Q9ULM6 557 aaKnown RBP14.17□□□□□ -0.14
NUP54-216ENST00000514901 DNAH14Q0VDD8 3507 aa14.17□□□□□ -0.14
NUP54-216ENST00000514901 GLYATL1P3A0A0U1RQE8 302 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 PRSS38A1L453 326 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 HEATR9A2RTY3 570 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 MROH6A6NGR9 719 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 FADS2P1A8MWK0 482 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 GPR89AB7ZAQ6 455 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 TPP1O14773 563 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 SCAMP1O15126 338 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 INPP4BO15327 924 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 AQP9O43315 295 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 SH3BP5O60239 455 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 SLC25A14O95258 325 aaPredicted RBP14.16□□□□□ -0.14
NUP54-216ENST00000514901 IVLP07476 585 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 GPR89BP0CG08 455 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 ALPPL2P10696 532 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 CEACAM1P13688 526 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 PSMA3P25788 255 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 ADCY8P40145 1251 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 VPS41P49754 854 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 ZNF140P52738 457 aaPredicted RBP14.16□□□□□ -0.14
NUP54-216ENST00000514901 PTK6Q13882 451 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 TUBB2AQ13885 445 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 POU6F1Q14863 301 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 ELOCQ15369 112 aa14.16□□□□□ -0.14
NUP54-216ENST00000514901 PRRT3Q5FWE3 981 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms