RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NMUR1Q9HB89 426 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CIDEBQ9UHD4 219 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CLDN11O75508 207 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 TBX18O95935 607 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 ASGR1P07306 291 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 CKMT2P17540 419 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 POLR2JP52435 117 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 FNDC3BQ53EP0 1204 aaKnown RBP12.64□□□□□ -0.39
USP53-209ENST00000514665 CEP78Q5JTW2 689 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 C19orf18Q8NEA5 215 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 IPPKQ9H8X2 491 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 ZFYVE1Q9HBF4 777 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 TXNRD2Q9NNW7 524 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 RPS6KA6Q9UK32 745 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 AP3M1Q9Y2T2 418 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 MFHAS1Q9Y4C4 1052 aa12.64□□□□□ -0.39
USP53-209ENST00000514665 TRIM43BA6NCK2 446 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TBC1D3BA6NDS4 549 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PIP5K1BO14986 540 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TSC22D2O75157 780 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 OR4F21O95013 312 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 GOT2P00505 430 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 NOS3P29474 1203 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 CORO1AP31146 461 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 FEN1P39748 380 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 MAPK8P45983 427 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 GNPDA1P46926 289 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.63□□□□□ -0.39
USP53-209ENST00000514665 ARHGAP1Q07960 439 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 LCP2Q13094 533 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 INTS11Q5TA45 600 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 HIPK1Q86Z02 1210 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 RTL3Q8N8U3 475 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 PIWIL1Q96J94 861 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 PEBP4Q96S96 227 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 ATG10Q9H0Y0 220 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 RASSF1Q9NS23 344 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 IKZF3Q9UKT9 509 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 KCNE2Q9Y6J6 123 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 TTC24A2A3L6 582 aaPredicted RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 EFCAB10A6NFE3 127 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TMEM233B4DJY2 109 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 SLC28A1O00337 649 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 MYL12BO14950 172 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 CLTBP09497 229 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 ECHS1P30084 290 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 GNA12Q03113 381 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 RGS21Q2M5E4 152 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PAGE2BQ5JRK9 111 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PDZK1Q5T2W1 519 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 ATAD3BQ5T9A4 648 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 OLFML1Q6UWY5 402 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 GALNT5Q7Z7M9 940 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PTCD2Q8WV60 388 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 REPS1Q96D71 796 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PRRG3Q9BZD7 231 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 ETAA1Q9NY74 926 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 ZNF490Q9ULM2 529 aaPredicted RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 SIX3O95343 332 aaPredicted RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 XRCC1P18887 633 aaPredicted RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 MYL12AP19105 171 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 GABRR2P28476 465 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TALDO1P37837 337 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 THOP1P52888 689 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 SGCGQ13326 291 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 ACAP2Q15057 778 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PARP15Q460N3 678 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 REP15Q6BDI9 236 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TMC5Q6UXY8 1006 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 SLC24A5Q71RS6 500 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 TAS1R3Q7RTX0 852 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PHTF2Q8N3S3 785 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 AADATQ8N5Z0 425 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 MAB21L3Q8N8X9 362 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 GIPC3Q8TF64 312 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 FIZ1Q96SL8 496 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 CYP2S1Q96SQ9 504 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 EIF2B4Q9UI10 523 aaKnown RBP12.63□□□□□ -0.39
USP53-209ENST00000514665 TELO2Q9Y4R8 837 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 PSAT1Q9Y617 370 aa12.63□□□□□ -0.39
USP53-209ENST00000514665 BBIP1A8MTZ0 92 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 UGT2B4P06133 528 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 HPGDP15428 266 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 UBE2R2Q712K3 238 aaPredicted RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 PSMA8Q8TAA3 256 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 STYXQ8WUJ0 223 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 ATL1Q8WXF7 558 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 ZHX1-C8orf76Q96EF9 292 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 HERPUD2Q9BSE4 406 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 PLGRKTQ9HBL7 147 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 EIF2B3Q9NR50 452 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 MAGEL2Q9UJ55 1249 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 FAM159BA6NKW6 160 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 CAPN1P07384 714 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 PAICSP22234 425 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 PSMD7P51665 324 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 TMEM214Q6NUQ4 689 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 FRMD7Q6ZUT3 714 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms