RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CXCR3P49682 368 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 KCNK10P57789 538 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CLCQ05315 142 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 C6orf10Q5SRN2 563 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 TMEM236Q5W0B7 351 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 SPRYD7Q5W111 196 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 ESRP1Q6NXG1 681 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 TAF2Q6P1X5 1199 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 SLC22A16Q86VW1 577 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CEP97Q8IW35 865 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 LSMEM2Q8N112 164 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 POC5Q8NA72 575 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 PPHLN1Q8NEY8 458 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 ABHD11Q8NFV4 315 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 FBXO30Q8TB52 745 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CHPT1Q8WUD6 406 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 STARD8Q92502 1023 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 SNX19Q92543 992 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 TMEM74Q96NL1 305 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 SMOQ99835 787 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 IL22Q9GZX6 179 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 LHPPQ9H008 270 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 GIT1Q9Y2X7 761 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 MAGED1Q9Y5V3 778 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 RALGAPA2Q2PPJ7 1873 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 KRT8P05787 483 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 PABPC1P11940 636 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 ADSLP30566 484 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 HPCAL1P37235 193 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 NR4A2P43354 598 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CD151P48509 253 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 GSSP48637 474 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 HCAR3P49019 387 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 NPY2RP49146 381 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 IL5RAQ01344 420 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 SLC13A2Q13183 592 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 RFTN1Q14699 578 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 USP41Q3LFD5 358 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 KIAA0319Q5VV43 1072 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 RAB44Q7Z6P3 723 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 PSD4Q8NDX1 1056 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 ZNF420Q8TAQ5 688 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 TRUB1Q8WWH5 349 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 SMARCD1Q96GM5 515 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 NSMCE3Q96MG7 304 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 VAT1Q99536 393 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 TUBA8Q9NY65 449 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 VPS28Q9UK41 221 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 HAS3O00219 553 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 NME4O00746 187 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 MT-CYBP00156 380 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 FYNP06241 537 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CTSHP09668 335 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 ZNF865P0CJ78 1059 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 SLC35E2BP0CK96 405 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 HGFP14210 728 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CLCNKBP51801 687 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CDH17Q12864 832 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 TRAP1Q12931 704 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 FSCN1Q16658 493 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 INTS6LQ5JSJ4 861 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 ZNF362Q5T0B9 420 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 NAPEPLDQ6IQ20 393 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 DNAJC14Q6Y2X3 702 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 FRA10AC1Q70Z53 315 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 ZC3HC1Q86WB0 502 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 C8orf59Q8N0T1 100 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 MIER2Q8N344 545 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CPSF7Q8N684 471 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 ANKFN1Q8N957 763 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 OR52K2Q8NGK3 314 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 PTPN18Q99952 460 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 C6orf62Q9GZU0 229 aaPredicted RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 WDR6Q9NNW5 1121 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 FAM105AQ9NUU6 356 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 MTRRQ9UBK8 725 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 IPO11Q9UI26 975 aaKnown RBP9.62□□□□□ -0.87
VCAN-210ENST00000513960 CDH9Q9ULB4 789 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 PTCH2Q9Y6C5 1203 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 U3KQV3 271 aa9.62□□□□□ -0.87
VCAN-210ENST00000513960 CASTOR2A6NHX0 329 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 MEIS3P2A8K0S8 358 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 TAF4O00268 1085 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 ASNA1O43681 348 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 HS6ST1O60243 411 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 BDNFP23560 247 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 SERPINB10P48595 397 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 SCAPQ12770 1279 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 LRP8Q14114 963 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 SF3B4Q15427 424 aaKnown RBP eCLIP9.61□□□□□ -0.87
VCAN-210ENST00000513960 MEP1AQ16819 746 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 AGAP9Q5VTM2 703 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 PAGE2Q7Z2X7 111 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 R3HCC1LQ7Z5L2 792 aaKnown RBP9.61□□□□□ -0.87
VCAN-210ENST00000513960 CTU1Q7Z7A3 348 aaKnown RBP9.61□□□□□ -0.87
VCAN-210ENST00000513960 METTL23Q86XA0 190 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 EPHX4Q8IUS5 362 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 SYTL1Q8IYJ3 562 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 MICU2Q8IYU8 434 aa9.61□□□□□ -0.87
VCAN-210ENST00000513960 DCBLD1Q8N8Z6 715 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms