RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 PITRM1Q5JRX3 1037 aa11.23□□□□□ -0.61
TCOF1-211ENST00000513346 TMEM214Q6NUQ4 689 aaKnown RBP11.23□□□□□ -0.61
TCOF1-211ENST00000513346 XYLT1Q86Y38 959 aa11.23□□□□□ -0.61
TCOF1-211ENST00000513346 DEPDC4Q8N2C3 294 aa11.23□□□□□ -0.61
TCOF1-211ENST00000513346 IRGQQ8WZA9 623 aa11.23□□□□□ -0.61
TCOF1-211ENST00000513346 EMILIN2Q9BXX0 1053 aa11.23□□□□□ -0.61
TCOF1-211ENST00000513346 CRYL1Q9Y2S2 319 aa11.23□□□□□ -0.61
TCOF1-211ENST00000513346 FAM159BA6NKW6 160 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 TULP3O75386 442 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PRKD3O94806 890 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 FTH1P02794 183 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 SERPINF2P08697 491 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PTPN1P18031 435 aaKnown RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 OR1E1P30953 314 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ARL4DP49703 201 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 OR2B6P58173 313 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PCBP1Q15365 356 aaKnown RBP eCLIP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 SIX1Q15475 284 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF284Q2VY69 593 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 MBLAC2Q68D91 279 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF549Q6P9A3 640 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 GCNT7Q6ZNI0 430 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ERMP1Q7Z2K6 904 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 C16orf62Q7Z3J2 963 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 CAMKK1Q8N5S9 505 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 OR2T12Q8NG77 320 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 BSNDQ8WZ55 320 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ELMO1Q92556 727 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 DEFB118Q96PH6 123 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 QKIQ96PU8 341 aaKnown RBP eCLIP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 SEZ6LQ9BYH1 1024 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ADGRE2Q9UHX3 823 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 H0YJX3 145 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 RGS14O43566 566 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 NDUFB5O43674 189 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 NPHS1O60500 1241 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 EFCAB14O75071 495 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 COQ9O75208 318 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 CYP4B1P13584 511 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ITGALP20701 1170 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 HOXD13P35453 343 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 RENBPP51606 427 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 TMBIM6P55061 237 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 GRM3Q14832 879 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PLEKHG4Q58EX7 1191 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PKN3Q6P5Z2 889 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 UGT2A3Q6UWM9 527 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 MILR1Q7Z6M3 343 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 SMG8Q8ND04 991 aaKnown RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 GAB3Q8WWW8 586 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PIK3R3Q92569 461 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 REXO5Q96IC2 774 aaKnown RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 DMRTB1Q96MA1 342 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF347Q96SE7 839 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 POPDC2Q9HBU9 364 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 INTS10Q9NVR2 710 aaKnown RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 RPS6KA6Q9UK32 745 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 GSTK1Q9Y2Q3 226 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ST14Q9Y5Y6 855 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 LRRC37A3O60309 1634 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 SERPINA1P01009 418 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 IL6P05231 212 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 TSPAN19P0C672 248 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 USP17L7P0C7H9 530 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 POLD2P49005 469 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF135P52742 658 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 KLF1Q13351 362 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 DNASE1L3Q13609 305 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 HNRNPDQ14103 355 aaKnown RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 SIM2Q14190 667 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-211ENST00000513346 CASP12Q6UXS9 341 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 LRRC49Q8IUZ0 686 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ADGRE3Q9BY15 652 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 BCAS3Q9H6U6 928 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF232Q9UNY5 417 aa11.22□□□□□ -0.61
TCOF1-211ENST00000513346 PCP4L1A6NKN8 68 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 BTN3A1O00481 513 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 HAT1O14929 419 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 FOXD2O60548 495 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-211ENST00000513346 MLYCDO95822 493 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 IL1BP01584 269 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 SOAT1P35610 550 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 BLVRAP53004 296 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 CYP4F2P78329 520 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 CYP4F3Q08477 520 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 DUSP28Q4G0W2 176 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 CERCAMQ5T4B2 595 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 TUBA3EQ6PEY2 450 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 SPATA19Q7Z5L4 167 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 NIPA2Q8N8Q9 360 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 FAM45AQ8TCE6 357 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 CLEC4DQ8WXI8 215 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 TMCO6Q96DC7 493 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 CLPBQ9H078 707 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 IRF2BPLQ9H1B7 796 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 ELOVL6Q9H5J4 265 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 USP29Q9HBJ7 922 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 ATP13A1Q9HD20 1204 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 XPNPEP1Q9NQW7 623 aa11.21□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF358Q9NW07 568 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms