RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 WDR26Q9H7D7 661 aa29.47■■■□□ 2.31
LIMCH1-211ENST00000509638 MRM3Q9HC36 420 aaKnown RBP29.47■■■□□ 2.31
LIMCH1-211ENST00000509638 DNAH14Q0VDD8 3507 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 FADS2P1A8MWK0 482 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 GAPDHSO14556 408 aaPredicted RBP29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 PRAMEF1O95521 474 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 CFIP05156 583 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 CSNK1EP49674 416 aaKnown RBP29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 PFN3P60673 137 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 NLRP8Q86W28 1048 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 HEATR4Q86WZ0 1026 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 TRAM1L1Q8N609 369 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 MFSD2AQ8NA29 543 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 TRIM56Q9BRZ2 755 aaKnown RBP29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 RIMKLBQ9ULI2 386 aa29.46■■■□□ 2.31
LIMCH1-211ENST00000509638 ZFHX2Q9C0A1 2572 aaPredicted RBP29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 GPR39O43194 453 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 PYGLP06737 847 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 THEGLP0DJG4 465 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 RABIFP47224 123 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 ARSDP51689 593 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 TEAD4Q15561 434 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 ARMC3Q5W041 872 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 Q6ZSR6 202 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 IQCHQ86VS3 1027 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 PEX13Q92968 403 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 PHOX2BQ99453 314 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 SMOC1Q9H4F8 434 aa29.45■■■□□ 2.31
LIMCH1-211ENST00000509638 ADAMTS9Q9P2N4 1935 aa29.45■■■□□ 2.3
LIMCH1-211ENST00000509638 TMEM131Q92545 1883 aa29.45■■■□□ 2.3
LIMCH1-211ENST00000509638 PCDH15Q96QU1 1955 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 PATE3B3GLJ2 98 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 PROB1E7EW31 1015 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 NMBRP28336 390 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 DUOXA1Q1HG43 343 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 ADAMTSL4Q6UY14 1074 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 MICALCLQ6ZW33 695 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 SLC22A18ASQ8N1D0 253 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 CEP76Q8TAP6 659 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 FAM174AQ8TBP5 190 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 STAMBPL1Q96FJ0 436 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 SUDS3Q9H7L9 328 aaPredicted RBP29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 TREX1Q9NSU2 369 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 ZDHHC18Q9NUE0 388 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 NCDNQ9UBB6 729 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 APPL1Q9UKG1 709 aa29.44■■■□□ 2.3
LIMCH1-211ENST00000509638 VILLO15195 856 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 PSMA3P25788 255 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 TEAD1P28347 426 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 TRIM23P36406 574 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 XIAPP98170 497 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 ACVR1Q04771 509 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 OVGP1Q12889 678 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 CHRNA6Q15825 494 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 CES3Q6UWW8 571 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 IFT81Q8WYA0 676 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 FUBP1Q96AE4 644 aaKnown RBP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 MFSD3Q96ES6 412 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 KLHDC7BQ96G42 594 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 APOOQ9BUR5 198 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 RRAGDQ9NQL2 400 aaPredicted RBP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 H7C0S8 307 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 INPP4BO15327 924 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 SRP72O76094 671 aaKnown RBP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 MC4RP32245 332 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 CDK3Q00526 305 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 PEX6Q13608 980 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 HLTFQ14527 1009 aaKnown RBP eCLIP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 ATP13A5Q4VNC0 1218 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 TRIM61Q5EBN2 209 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 HP1BP3Q5SSJ5 553 aaPredicted RBP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 PDPK2PQ6A1A2 396 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 CENPUQ71F23 418 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 ZNF669Q96BR6 464 aaPredicted RBP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 CDKN2AIPNLQ96HQ2 116 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 TBATAQ96M53 351 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 WDR83Q9BRX9 315 aaKnown RBP29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 TEX101Q9BY14 249 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 GDF3Q9NR23 364 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 GPR27Q9NS67 375 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 CHMP2BQ9UQN3 213 aa29.43■■■□□ 2.3
LIMCH1-211ENST00000509638 EP300Q09472 2414 aaPredicted RBP29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 LRP4O75096 1905 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 FAM237BA0A1B0GVD1 139 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 A0A1B0GVT2 93 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 E7ESA3 106 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 TLR4O00206 839 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 THOP1P52888 689 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 C21orf59P57076 290 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 YPEL5P62699 121 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 PDIA2Q13087 525 aaKnown RBP29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 PDE1CQ14123 709 aaPredicted RBP29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 PLA2G2CQ5R387 149 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 TPRG1LQ5T0D9 272 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 TRIM74Q86UV6 250 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 HDAC10Q969S8 669 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 SKA1Q96BD8 255 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 LGR4Q9BXB1 951 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 FAM129AQ9BZQ8 928 aa29.42■■■□□ 2.3
LIMCH1-211ENST00000509638 PHPT1Q9NRX4 125 aaPredicted RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms