RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 C11orf65Q8NCR3 313 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 SNX33Q8WV41 574 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 GATAD2BQ8WXI9 593 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 MASTLQ96GX5 879 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 TSNAXQ99598 290 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 MIPEPQ99797 713 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 RHOJQ9H4E5 214 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 MAGI2Q86UL8 1455 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 C5orf60A6NFR6 353 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 AKAP3O75969 853 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 PORP16435 677 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 GPAT3Q53EU6 434 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC47A2Q86VL8 602 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 OXR1Q8N573 874 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC37A3Q8NCC5 494 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 OR2L2Q8NH16 312 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ARL5BQ96KC2 179 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 TRPV4Q9HBA0 871 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 GPATCH2LQ9NWQ4 482 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 KDM5CP41229 1560 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 C5orf51A6NDU8 294 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CCNDBP1O95273 360 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 SHBGP04278 402 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 RAP2AP10114 183 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ARL3P36405 182 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 MBTD1Q05BQ5 628 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF267Q14586 743 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 GRK1Q15835 563 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CDKL4Q5MAI5 379 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 RNASEH2BQ5TBB1 312 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 FBXL16Q8N461 479 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 OR7G2Q8NG99 324 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 POF1BQ8WVV4 589 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 NXPE2Q96DL1 559 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 TBATAQ96M53 351 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 NMUR2Q9GZQ4 415 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CHST7Q9NS84 486 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 QPCTLQ9NXS2 382 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CARNS1A5YM72 827 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 C1orf196B1AJZ1 125 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 DLGAP1O14490 977 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 IL32P24001 234 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 DNASE1L1P49184 302 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 APLP1P51693 650 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 MARSP56192 900 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CYP4F8P98187 520 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF181Q2M3W8 571 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 LDLRAP1Q5SW96 308 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ISLR2Q6UXK2 745 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 C16orf86Q6ZW13 317 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CYP4V2Q6ZWL3 525 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 CCDC71Q8IV32 467 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC44A3Q8N4M1 653 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF433Q8N7K0 673 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 HSPA12BQ96MM6 686 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF670Q9BS34 389 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 FBXO6Q9NRD1 293 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 ARHGEF40Q8TER5 1519 aa11.19□□□□□ -0.62
LIMCH1-208ENST00000508501 BORCS7-ASMTA0A0B4J1R7 106 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 C9IYK1 514 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 DCLK1O15075 740 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 ARL6IP5O75915 188 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 PGLSO95336 258 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 PAPSS2O95340 614 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 IGKV5-2P06315 115 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 SRCP12931 536 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 IFI30P13284 250 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 AGTR1P30556 359 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 OR3A3P47888 321 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 OR3A2P47893 321 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 GJA9P57773 515 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC6A3Q01959 620 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 CRTC2Q53ET0 693 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 PITRM1Q5JRX3 1037 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 ARMC12Q5T9G4 340 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 KLHDC10Q6PID8 442 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 RNF44Q7L0R7 432 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 ADGRD2Q7Z7M1 963 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 ALYREFQ86V81 257 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 C4orf19Q8IY42 314 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 ADGRF2Q8IZF7 708 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 CSGALNACT1Q8TDX6 532 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 TAS1R2Q8TE23 839 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 DNAJC1Q96KC8 554 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 GPER1Q99527 375 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 LPIN3Q9BQK8 851 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 TCF7L1Q9HCS4 588 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 AAASQ9NRG9 546 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 DNMT1P26358 1616 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 SAMD9LQ8IVG5 1584 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 SIGLEC16A6NMB1 481 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 CYP27B1O15528 508 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 SULT1B1O43704 296 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 OR7A10O76100 309 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 CTDNEP1O95476 244 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 IFNA10P01566 189 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 HMGN1P05114 100 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 CD36P16671 472 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 EPHA3P29320 983 aa11.18□□□□□ -0.62
LIMCH1-208ENST00000508501 UGT2B10P36537 528 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms