RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RPL34P49207 117 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 TBX4P57082 545 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 YWHAZP63104 245 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 SIM1P81133 766 aaPredicted RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 MYL5Q02045 173 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 NME3Q13232 169 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 PDCLQ13371 301 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 GEN1Q17RS7 908 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 FBXO43Q4G163 708 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 DCAF6Q58WW2 860 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 CT47A1Q5JQC4 288 aaPredicted RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 NAA35Q5VZE5 725 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 NADSYN1Q6IA69 706 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 ANO7Q6IWH7 933 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 FAM183BPQ6ZVS7 135 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 SYT13Q7L8C5 426 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 APTXQ7Z2E3 356 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 TAC4Q86UU9 113 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 WDR5BQ86VZ2 330 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 LONP2Q86WA8 852 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 DHX40Q8IX18 779 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 DEFB106AQ8N104 65 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 C1orf131Q8NDD1 294 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 SLC30A5Q8TAD4 765 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 DQX1Q8TE96 717 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 HMGB4Q8WW32 186 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 IRGQQ8WZA9 623 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 RUBCNQ92622 972 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 GOLGA1Q92805 767 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 EXOC4Q96A65 974 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 OTUB2Q96DC9 234 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 TMA16Q96EY4 203 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 Q96MF0 132 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 NAP1L5Q96NT1 182 aaPredicted RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 XPO6Q96QU8 1125 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 FAM126AQ9BYI3 521 aaPredicted RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 STK33Q9BYT3 514 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 BRINP2Q9C0B6 783 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 GANQ9H2C0 597 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 LHX5Q9H2C1 402 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 ZMAT4Q9H898 229 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 PCDH12Q9NPG4 1184 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 OLA1Q9NTK5 396 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 LRIT1Q9P2V4 623 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 LIMA1Q9UHB6 759 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 RAB23Q9ULC3 237 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 MMP17Q9ULZ9 603 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 ZNF510Q9Y2H8 683 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 SIK3Q9Y2K2 1263 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 HBS1LQ9Y450 684 aaKnown RBP4.68□□□□□ -1.66
NUP54-206ENST00000508465 SNX10Q9Y5X0 201 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 RAD54BQ9Y620 910 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 PIEZO1Q92508 2521 aa4.68□□□□□ -1.66
NUP54-206ENST00000508465 EP300Q09472 2414 aaPredicted RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 A0A1W2PQF6 199 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 TCRBV21S2A2A0A5A6 115 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 SYCE3A1L190 88 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 LGALS16A8MUM7 142 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 F8VZ95 297 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 CACNG3O60359 315 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 ACSL4O60488 711 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 PRAMEF4O60810 478 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 PROP1O75360 226 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 RPP40O75818 363 aaKnown RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 PAPSS2O95340 614 aaPredicted RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 TRUB2O95900 331 aaKnown RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 PENKP01210 267 aaPredicted RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 GASTP01350 101 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 IGLV3-27P01718 113 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 TPM2P07951 284 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 CYP11B1P15538 503 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 ZNF18P17022 549 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 BCKDHBP21953 392 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 NTSR1P30989 418 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 HOXA6P31267 233 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 CHKAP35790 457 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 SLC11A2P49281 568 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 RPS24P62847 133 aaKnown RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 CDK17Q00537 523 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 SF3A2Q15428 464 aaKnown RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 PTPN20Q4JDL3 420 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 RAB6CQ53S08 254 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 C19orf54Q5BKX5 351 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 FAM133BQ5BKY9 247 aaKnown RBP4.67□□□□□ -1.66
NUP54-206ENST00000508465 FSCBQ5H9T9 825 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 RAP1GAP2Q684P5 730 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 TMEM215Q68D42 235 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 MSANTD2Q6P1R3 559 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 Q6ZNX1 250 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 MMS22LQ6ZRQ5 1243 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 C14orf80Q86SX3 495 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 ERICH1Q86X53 443 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 DNAAF5Q86Y56 855 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 CHPFQ8IZ52 775 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 LGI2Q8N0V4 545 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 SCML4Q8N228 414 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 CAMKK1Q8N5S9 505 aa4.67□□□□□ -1.66
NUP54-206ENST00000508465 ZNF366Q8N895 744 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms