RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 TEAD1P28347 426 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 CD6P30203 668 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 FOXN2P32314 431 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 ACSL1P33121 698 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 SPAM1P38567 509 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 CCR5P51681 352 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 EIF3BP55884 814 aaKnown RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 PRAMEP78395 509 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 MGAT5Q09328 741 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 CASP8Q14790 479 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 RASA2Q15283 850 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 TYSND1Q2T9J0 566 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 KBTBD12Q3ZCT8 623 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 GPR33Q49SQ1 333 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 ALS2CLQ60I27 953 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 ANO7Q6IWH7 933 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 NEPROQ6NW34 567 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 TRMT10BQ6PF06 316 aaKnown RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 AFTPHQ6ULP2 937 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 LRIG3Q6UXM1 1119 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 KIAA0408Q6ZU52 694 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 Q6ZVL8 140 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 MARK2Q7KZI7 788 aaKnown RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 HDXQ7Z353 690 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 SNX20Q7Z614 316 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 SLC26A11Q86WA9 606 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 HORMAD1Q86X24 394 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 CACUL1Q86Y37 369 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 UNC5BQ8IZJ1 945 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 CACTIN-AS1Q8N1I8 211 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 PGBD3Q8N328 593 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 FBXL6Q8N531 539 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 TRAM1L1Q8N609 369 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 TMEM105Q8N8V8 129 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 C2CD4AQ8NCU7 369 aaPredicted RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 GABPB2Q8TAK5 448 aaPredicted RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 LENG8Q96PV6 779 aaPredicted RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 VPS35Q96QK1 796 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 TCF12Q99081 682 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 CYTH2Q99418 400 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 MCMBPQ9BTE3 642 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 DHRS4Q9BTZ2 278 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 ZSCAN5AQ9BUG6 496 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 WRAP53Q9BUR4 548 aaKnown RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 ROPN1BQ9BZX4 212 aaPredicted RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 PCED1AQ9H1Q7 454 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 ABCG8Q9H221 673 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 RASSF4Q9H2L5 321 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 FAM83DQ9H4H8 585 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 VIPAS39Q9H9C1 493 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 PPCSQ9HAB8 311 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 ROPN1Q9HAT0 212 aaPredicted RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 BPIFA1Q9NP55 256 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 IL26Q9NPH9 171 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 C20orf96Q9NUD7 363 aaPredicted RBP7.17□□□□□ -1.26
NUP54-204ENST00000506098 NSMCE4AQ9NXX6 385 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 VPS18Q9P253 973 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 FKBPLQ9UIM3 349 aa7.17□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3DA0A087WVF3 549 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3IA0A087WXS9 549 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3EA0A087X179 549 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3KA0A087X1G2 549 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 GLYATL1P3A0A0U1RQE8 302 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 A0A1W2PQU0 124 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3FA6NER0 549 aaPredicted RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 IGLON5A6NGN9 336 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 CXorf49A8MYA2 514 aaPredicted RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3LB9A6J9 549 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 CCL22O00626 93 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 AXIN1O15169 862 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 CD3EAPO15446 510 aaKnown RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 ATP8B1O43520 1251 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 LZTS3O60299 673 aaPredicted RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 SRP72O76094 671 aaKnown RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 RECQL5O94762 991 aaPredicted RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 SEMA4FO95754 770 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 SOD1P00441 154 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 SHBGP04278 402 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 PYGLP06737 847 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 TBC1D3HP0C7X1 549 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 ERVK-10P10266 1014 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 GCAP28676 217 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 MC4RP32245 332 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 TRIM23P36406 574 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 NUDT1P36639 197 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 ETV3P41162 512 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 LEPRP48357 1165 aaKnown RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 CSE1LP55060 971 aaKnown RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 TMPRSS15P98073 1019 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 CACNG1Q06432 222 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 ILF2Q12905 390 aaKnown RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 NFATC2Q13469 925 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 ITGA9Q13797 1035 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 FGL2Q14314 439 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 ACOX1Q15067 660 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 ZNF284Q2VY69 593 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 KLHL38Q2WGJ6 581 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 FASTKD1Q53R41 847 aaKnown RBP7.16□□□□□ -1.26
NUP54-204ENST00000506098 HSP90AA5PQ58FG0 334 aa7.16□□□□□ -1.26
NUP54-204ENST00000506098 LYPLAL1Q5VWZ2 237 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms