RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PRR5-ARHGAP8B1AHC4 643 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 BHMG1C9JSJ3 638 aaPredicted RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 GAPDHSO14556 408 aaPredicted RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A9O60656 530 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 SRP72O76094 671 aaKnown RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 SOD1P00441 154 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 RETP07949 1114 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A6P19224 532 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A1P22309 533 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A4P22310 534 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 MC4RP32245 332 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A3P35503 534 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A5P35504 534 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ELK3P41970 407 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 DPP6P42658 865 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 RABIFP47224 123 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 CARSP49589 748 aaKnown RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 THOP1P52888 689 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 C21orf59P57076 290 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 PFN3P60673 137 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 NHLH1Q02575 133 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 DPTQ07507 201 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 PDE1CQ14123 709 aaPredicted RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 ATP13A5Q4VNC0 1218 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 TRIM61Q5EBN2 209 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ZRANB3Q5FWF4 1079 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 TPRG1LQ5T0D9 272 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 PEAR1Q5VY43 1037 aaPredicted RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 ZDHHC20Q5W0Z9 365 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 TCEAL6Q6IPX3 200 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 DOK6Q6PKX4 331 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 CENPUQ71F23 418 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 NLRP9Q7RTR0 991 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 IGDCC3Q8IVU1 814 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 IFT20Q8IY31 132 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 RAVER1Q8IY67 606 aaKnown RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 ZBED8Q8IZ13 594 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 TRAM1L1Q8N609 369 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 MFSD2AQ8NA29 543 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 OR13J1Q8NGT2 312 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 OR6P1Q8NGX9 317 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 PTCD2Q8WV60 388 aaKnown RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 TCEAL3Q969E4 200 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 HDAC10Q969S8 669 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 FUBP1Q96AE4 644 aaKnown RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 ZNF669Q96BR6 464 aaPredicted RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 MFSD3Q96ES6 412 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 CFAP36Q96G28 342 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 CDKN2AIPNLQ96HQ2 116 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 TBATAQ96M53 351 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ZSCAN5AQ9BUG6 496 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 APOOQ9BUR5 198 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 KIFC1Q9BW19 673 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 LGR4Q9BXB1 951 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 CDH19Q9H159 772 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ASB8Q9H765 288 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 WDR26Q9H7D7 661 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A7Q9HAW7 530 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A10Q9HAW8 530 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 UGT1A8Q9HAW9 530 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ARFGAP3Q9NP61 516 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 SAYSD1Q9NPB0 183 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 GDF3Q9NR23 364 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ZDHHC18Q9NUE0 388 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 NFKBIL1Q9UBC1 381 aaPredicted RBP11.83□□□□□ -0.52
CUX1-210ENST00000497815 APPL1Q9UKG1 709 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 PCDHGA5Q9Y5G8 931 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 SLC30A1Q9Y6M5 507 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 RPS6KL1Q9Y6S9 549 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 CEP192Q8TEP8 1941 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 ABCA7Q8IZY2 2146 aa11.83□□□□□ -0.52
CUX1-210ENST00000497815 LRRK1Q38SD2 2015 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 TNRC6BQ9UPQ9 1833 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 FAM237BA0A1B0GVD1 139 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 MAGEB16A2A368 324 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 TLR4O00206 839 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 CACNB4O00305 520 aaPredicted RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 VILLO15195 856 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 GOT2P00505 430 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 PRSS56P0CW18 603 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 PGAM1P18669 254 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 CA5AP35218 305 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 HOXD12P35452 270 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 PRAMEP78395 509 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 XIAPP98170 497 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 CDK3Q00526 305 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 SPEM2Q0P670 501 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 PEX6Q13608 980 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 FASTKD3Q14CZ7 662 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 DUOXA1Q1HG43 343 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 ANKRD20A4Q4UJ75 823 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 ZNF648Q5T619 568 aaPredicted RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 ADAMTSL4Q6UY14 1074 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 CAPN12Q6ZSI9 719 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 SLC22A18ASQ8N1D0 253 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 FBXO36Q8NEA4 188 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 CEP76Q8TAP6 659 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 GDAP1Q8TB36 358 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 ZNF398Q8TD17 642 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 SKA1Q96BD8 255 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms