RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 NDNQ99608 321 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 RAD9AQ99638 391 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 OMDQ99983 421 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 FEM1AQ9BSK4 669 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 AARSD1Q9BTE6 412 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 CCDC28BQ9BUN5 200 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 GATA5Q9BWX5 397 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 C1QTNF1Q9BXJ1 281 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 NMUR2Q9GZQ4 415 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 RNF38Q9H0F5 515 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 C1orf21Q9H246 121 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 KCNK13Q9HB14 408 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 MAGEE1Q9HCI5 957 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ZNF334Q9HCZ1 680 aaPredicted RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 ZNF358Q9NW07 568 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 NOP53Q9NZM5 478 aaKnown RBP6.91□□□□□ -1.3
USP39-219ENST00000496047 LHX3Q9UBR4 397 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 VPS51Q9UID3 782 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 GNPTGQ9UJJ9 305 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ARHGAP26Q9UNA1 814 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ZNF711Q9Y462 761 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 IRAK3Q9Y616 596 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 ARL5AQ9Y689 179 aa6.91□□□□□ -1.3
USP39-219ENST00000496047 A0A1W2PRU2 124 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CCDC162PA2VCL2 907 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 H7C0S8 307 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 LEFTY2O00292 366 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 ITM2AO43736 263 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 MAGEC1O60732 1142 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 SNX2O60749 519 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CRCPO75575 148 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 STAMBPO95630 424 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CHEK2O96017 543 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 GSRP00390 522 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 GFAPP14136 432 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 PKMP14618 531 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 SNRPBP14678 240 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 ZNF37AP17032 561 aaPredicted RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 ZNF7P17097 686 aaPredicted RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 CD9P21926 228 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 PGM1P36871 562 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 PTGER3P43115 390 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 RGS4P49798 205 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 SMCPP49901 116 aaPredicted RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 IDH3AP50213 366 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CSRP3P50461 194 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 SGSHP51688 502 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CLCN4P51793 760 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 NAGLUP54802 743 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 RAB15P59190 212 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 STX1BP61266 288 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 NFKB2Q00653 900 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CACNG1Q06432 222 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 TRMT5Q32P41 509 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 TTLL9Q3SXZ7 439 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 SH2D4BQ5SQS7 431 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 RBM20Q5T481 1227 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 GRAMD4Q6IC98 578 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 TAS2R42Q7RTR8 314 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 TMC8Q8IU68 726 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CEP97Q8IW35 865 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 DEPDC4Q8N2C3 294 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 PCDH20Q8N6Y1 951 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 ZNF781Q8N8C0 355 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 FIBINQ8TAL6 211 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 STAG3L4Q8TBR4 150 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 HEXDCQ8WVB3 486 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 MYEOVQ96EZ4 313 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 ANKRD27Q96NW4 1050 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 SORT1Q99523 831 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CCDC106Q9BWC9 280 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 TBC1D10AQ9BXI6 508 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CEP44Q9C0F1 390 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CLPBQ9H078 707 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 TFB2MQ9H5Q4 396 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 COG4Q9H9E3 785 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 MRPL40Q9NQ50 206 aaKnown RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 RAD18Q9NS91 495 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 ABCB8Q9NUT2 735 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 ARL8BQ9NVJ2 186 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 PNPOQ9NVS9 261 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 POLR3BQ9NW08 1133 aaPredicted RBP6.9□□□□□ -1.3
USP39-219ENST00000496047 RNF112Q9ULX5 631 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CRYL1Q9Y2S2 319 aa6.9□□□□□ -1.3
USP39-219ENST00000496047 CROCCQ5TZA2 2017 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 VCANP13611 3396 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 CAPN8A6NHC0 703 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 A8MT66 165 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 B2RBV5 119 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 SUPT3HB4E1H0 165 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 TERTO14746 1132 aaKnown RBP6.89□□□□□ -1.31
USP39-219ENST00000496047 MUSKO15146 869 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 CCL16O15467 120 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 DLX3O60479 287 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 SNAP91O60641 907 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 KERAO60938 352 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 VPS4BO75351 444 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 SUPT3HO75486 399 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 GPC4O75487 556 aa6.89□□□□□ -1.31
USP39-219ENST00000496047 SUPT7LO94864 414 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms