RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TBC1D4O60343 1298 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ATP6AP2O75787 350 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 MYO1DO94832 1006 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 JCHAINP01591 159 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ENO2P09104 434 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-230ENST00000495090 PCMT1P22061 227 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 NFKBIAP25963 317 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 TKTP29401 623 aaKnown RBP9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ADRA1AP35348 466 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 HMGCS2P54868 508 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 GEMP55040 296 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 IFITM3Q01628 133 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 LY6KQ17RY6 165 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ARL13BQ3SXY8 428 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 PERM1Q5SV97 790 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 RBM20Q5T481 1227 aaKnown RBP9.65□□□□□ -0.86
SYNE1-230ENST00000495090 SLCO6A1Q86UG4 719 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ZBTB46Q86UZ6 589 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 SCML4Q8N228 414 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 PDZD8Q8NEN9 1154 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 SLC2A14Q8TDB8 520 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 CHAC2Q8WUX2 184 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 TWIST2Q8WVJ9 160 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 TRAPPC12Q8WVT3 735 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF566Q969W8 418 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 BIRC7Q96CA5 298 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 PHF21BQ96EK2 531 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 DUSP16Q9BY84 665 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 PARVBQ9HBI1 364 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 MYOZ2Q9NPC6 264 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 SCUBE2Q9NQ36 999 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 LEF1Q9UJU2 399 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-230ENST00000495090 PCDHB3Q9Y5E6 796 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 SNX5Q9Y5X3 404 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 GPR45Q9Y5Y3 372 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ST14Q9Y5Y6 855 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 COL4A5P29400 1685 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 SCN1AP35498 2009 aa9.65□□□□□ -0.87
SYNE1-230ENST00000495090 A0A087WZ62 844 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SOWAHBA6NEL2 793 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 AZIN1O14977 448 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PIP5K1BO14986 540 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 TSPAN1O60635 241 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CCDC159P0C7I6 412 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PRR35P0CG20 571 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 RAP2AP10114 183 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CCNCP24863 283 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 HRH2P25021 359 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ACVR2AP27037 513 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CHRNA5P30532 468 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PLK1P53350 603 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 GP2P55259 537 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 KCNK10P57789 538 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SH3BP2P78314 561 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ECT2LQ008S8 904 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 EMX2Q04743 252 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 IL18R1Q13478 541 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 LAMC2Q13753 1193 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 POU6F1Q14863 301 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 DPY19L1Q2PZI1 675 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 INAVAQ3KP66 663 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 LDLRAP1Q5SW96 308 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 DCAF15Q66K64 600 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 RPS27LQ71UM5 84 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CATSPER4Q7RTX7 472 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PRSS48Q7RTY5 328 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 LIMS2Q7Z4I7 341 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ZCCHC7Q8N3Z6 543 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 AADATQ8N5Z0 425 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 OR7A2PQ8NGA2 310 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 OR6Q1Q8NGQ2 317 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ZFP90Q8TF47 636 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CCDC97Q96F63 343 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 TNIP3Q96KP6 325 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 NSMCE2Q96MF7 247 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 YME1L1Q96TA2 773 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 FDXACB1Q9BRP7 624 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 HERC2P3Q9BVR0 1158 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 LRRC3Q9BY71 257 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ADNPQ9H2P0 1102 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 FAM118AQ9NWS6 357 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 GDAP2Q9NXN4 497 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 UBP1Q9NZI7 540 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ATP11BQ9Y2G3 1177 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 DGKBQ9Y6T7 804 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 DICER1Q9UPY3 1922 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF99A8MXY4 864 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PPEF2O14830 753 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 NUAK1O60285 661 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 NDUFS2O75306 463 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 GMNNO75496 209 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CDK14O94921 469 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 MT-CO1P00395 513 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 BMP1P13497 986 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 HOXB8P17481 243 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CD40LGP29965 261 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 NEK2P51955 445 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 GRB7Q14451 532 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 POLD3Q15054 466 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 RPS6KA2Q15349 733 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms