RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MFSD1Q9H3U5 465 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 PLXNA3P51805 1871 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 RNF103-CHMP3A0A140T963 221 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 A0A1B0GTL3 188 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 SLCO1B7G3V0H7 640 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 CD3EAPO15446 510 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 TMCC1O94876 653 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 IRF1P10914 325 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 NR4A1P22736 598 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 XIAPP98170 497 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 CYHR1Q6ZMK1 362 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 LRRC49Q8IUZ0 686 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 TEX26Q8N6G2 289 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 DNAJB14Q8TBM8 379 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 BCL7CQ8WUZ0 217 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 CCDC28BQ9BUN5 200 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 NACA2Q9H009 215 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 GKN1Q9NS71 199 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 PHF24Q9UPV7 400 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 SPO11Q9Y5K1 396 aa16.48■□□□□ 0.23
CCDC88B-210ENST00000494566 LOC285095A0A1B0GVY8 99 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 ATF6P18850 670 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 ENTPD1P49961 510 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 C16orf72Q14CZ0 275 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 OR4D1Q15615 310 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 PFKFB4Q16877 469 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 CHSY3Q70JA7 882 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 RETREG3Q86VR2 466 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 TICAM1Q8IUC6 712 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 MAELQ96JY0 434 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 ZBED2Q9BTP6 218 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 FAF1Q9UNN5 650 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 ZFP37Q9Y6Q3 630 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 TRPC5OSA6NMA1 111 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 GPR39O43194 453 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 SLC7A4O43246 635 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 NBNO60934 754 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 GLP2RO95838 553 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 HNRNPCP07910 306 aaKnown RBP eCLIP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 OXTRP30559 389 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 KPNA2P52292 529 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 DNAJB13P59910 316 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 IL10RBQ08334 325 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 GRB7Q14451 532 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 ZIK1Q3SY52 487 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 C16orf59Q7L2K0 433 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 PELI3Q8N2H9 469 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 PTGR2Q8N8N7 351 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 VPS33AQ96AX1 596 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 SEPHS2Q99611 448 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 DNAAF2Q9NVR5 837 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 DOLKQ9UPQ8 538 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 DMTF1Q9Y222 760 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 TRAF6Q9Y4K3 522 aa16.47■□□□□ 0.23
CCDC88B-210ENST00000494566 INPPL1O15357 1258 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 B4GAT1O43505 415 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 LINC00032P0C843 101 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 BMP1P13497 986 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 POLD2P49005 469 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 ACAP2Q15057 778 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 DUS1LQ6P1R4 473 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 FUT10Q6P4F1 479 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 DENND1CQ8IV53 801 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 AHI1Q8N157 1196 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 BHMTQ93088 406 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 RMDN1Q96DB5 314 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 PPP1R2P1Q96PQ5 205 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 NAA50Q9GZZ1 169 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 MUC3BQ9H195 1237 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 STARD7Q9NQZ5 370 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 POLR3BQ9NW08 1133 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 GALPQ9UBC7 116 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 IKZF3Q9UKT9 509 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 TIMM22Q9Y584 194 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 THSD7BQ9C0I4 1608 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 PRAMEF11O60813 436 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 RPLP2P05387 115 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 CST5P28325 142 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 FMO4P31512 558 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 TM4SF4P48230 202 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 NKX3-2P78367 333 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 PPP1R8Q12972 351 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 NEDD8Q15843 81 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 UNC50Q53HI1 259 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 TBCELQ5QJ74 424 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 ZNF678Q5SXM1 525 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 ZFP1Q6P2D0 407 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 TSPAN17Q96FV3 270 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 RANBP9Q96S59 729 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 BPIFA1Q9NP55 256 aa16.46■□□□□ 0.23
CCDC88B-210ENST00000494566 A0A1W2PQ45 241 aaPredicted RBP16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 A0A1W2PQY0 241 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 DRGXA6NNA5 263 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 F5H5T6 163 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 TMEM189-UBE2V1I3L0A0 370 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 RBP1P09455 135 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 SH3BP2P78314 561 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 FAM189BP81408 668 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 TMEM259Q4ZIN3 620 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms