RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 HGSO14964 777 aaPredicted RBP12.57□□□□□ -0.4
SKA1-205ENST00000494518 ARHGAP6O43182 974 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 LIFP15018 202 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 NFKBIAP25963 317 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 CSTF2P33240 577 aaKnown RBP eCLIP12.57□□□□□ -0.4
SKA1-205ENST00000494518 UGT1A3P35503 534 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 PRKCIP41743 596 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 GPR3P46089 330 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 ATP1A2P50993 1020 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 EPHB1P54762 984 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 CDH6P55285 790 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 DSC2Q02487 901 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 SLC25A11Q02978 314 aaKnown RBP12.57□□□□□ -0.4
SKA1-205ENST00000494518 IHHQ14623 411 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 FILIP1LQ4L180 1135 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 BOLA3Q53S33 107 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 FAM182AQ5T1J6 154 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 ADAMTSL4Q6UY14 1074 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 PTRH1Q86Y79 214 aaKnown RBP12.57□□□□□ -0.4
SKA1-205ENST00000494518 GALNT13Q8IUC8 556 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 NRSN1Q8IZ57 195 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 OR4D9Q8NGE8 314 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 NKD1Q969G9 470 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 TRIM11Q96F44 468 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 CTRCQ99895 268 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 RIOK2Q9BVS4 552 aaKnown RBP12.57□□□□□ -0.4
SKA1-205ENST00000494518 THAP2Q9H0W7 228 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 SLC39A1Q9NY26 324 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 IL17BQ9UHF5 180 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 ANAPC7Q9UJX3 599 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 CHKBQ9Y259 395 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 A0A0J9YYE9 177 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.56□□□□□ -0.4
SKA1-205ENST00000494518 TERTO14746 1132 aaKnown RBP12.56□□□□□ -0.4
SKA1-205ENST00000494518 ZW10O43264 779 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 TRBC1P01850 177 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 ATP1A1P05023 1023 aaKnown RBP12.56□□□□□ -0.4
SKA1-205ENST00000494518 MYBL1P10243 752 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 SERPINB6P35237 376 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 MAPK9P45984 424 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 CSRP3P50461 194 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 PTSQ03393 145 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 DPTQ07507 201 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 NFATC2Q13469 925 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 PYCR3Q53H96 274 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 ANKS6Q68DC2 871 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 ATG14Q6ZNE5 492 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 CACNA2D3Q8IZS8 1091 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 AGBL5Q8NDL9 886 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 LPCAT1Q8NF37 534 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 AHCYL2Q96HN2 611 aaKnown RBP12.56□□□□□ -0.4
SKA1-205ENST00000494518 SLC38A3Q99624 504 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 NUP85Q9BW27 656 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 SLC12A9Q9BXP2 914 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 ISCUQ9H1K1 167 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 KCTD5Q9NXV2 234 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 TMEM63CQ9P1W3 806 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 KLHL3Q9UH77 587 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 ZNHIT2Q9UHR6 403 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 OAS3Q9Y6K5 1087 aaKnown RBP12.56□□□□□ -0.4
SKA1-205ENST00000494518 RELNP78509 3460 aa12.56□□□□□ -0.4
SKA1-205ENST00000494518 FZD6O60353 706 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 RAD1O60671 282 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 SNX2O60749 519 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 PPFIA2O75334 1257 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 CLDN7O95471 211 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 PRKAR1AP10644 381 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 IL4RP24394 825 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 TEAD1P28347 426 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 ANP32AP39687 249 aaKnown RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 STC1P52823 247 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 TRA2AQ13595 282 aaKnown RBP eCLIP12.55□□□□□ -0.4
SKA1-205ENST00000494518 PIGHQ14442 188 aaPredicted RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 CLPPQ16740 277 aaPredicted RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 ATP13A4Q4VNC1 1196 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 RALGPS1Q5JS13 557 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 CHST15Q7LFX5 561 aaPredicted RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 UNC5BQ8IZJ1 945 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 TEX26Q8N6G2 289 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 CCDC112Q8NEF3 446 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 TEKT4Q8WW24 435 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 SCARF2Q96GP6 870 aaPredicted RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 MFRPQ9BY79 579 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 POLR1EQ9GZS1 481 aaKnown RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 NAT10Q9H0A0 1025 aaKnown RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 ARFGAP3Q9NP61 516 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 RBM22Q9NW64 420 aaKnown RBP eCLIP12.55□□□□□ -0.4
SKA1-205ENST00000494518 KCNK6Q9Y257 313 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 PPIL1Q9Y3C6 166 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 PCDHGA3Q9Y5H0 932 aa12.55□□□□□ -0.4
SKA1-205ENST00000494518 SPENQ96T58 3664 aaKnown RBP12.55□□□□□ -0.4
SKA1-205ENST00000494518 A0A1B0GTH6 734 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 GOLGA6L22H0YM25 854 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 SNPHO15079 494 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 SUV39H1O43463 412 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 DUX1O43812 170 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 HLA-DQB2P05538 268 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 ACP5P13686 325 aa12.54□□□□□ -0.4
SKA1-205ENST00000494518 GARSP41250 739 aaKnown RBP12.54□□□□□ -0.4
SKA1-205ENST00000494518 NIPAL4Q0D2K0 466 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms