RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FLNBO75369 2602 aaKnown RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 TRBV23OR9-2A0A075B6M9 112 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 SMTNL1A8MU46 457 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 INPP4BO15327 924 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 SUV39H1O43463 412 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 EML2O95834 649 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 ZNF30P17039 623 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 IL4RP24394 825 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 CSTF2P33240 577 aaKnown RBP eCLIP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 UGT1A3P35503 534 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 GARSP41250 739 aaKnown RBP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 STC1P52823 247 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 GPLD1P80108 840 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 DSC2Q02487 901 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 ITKQ08881 620 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 KRT81Q14533 505 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 TDRD12Q587J7 1177 aaKnown RBP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 HGSNATQ68CP4 663 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 NCBP2-AS2Q69YL0 99 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 ALG1LQ6GMV1 187 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 TMEM71Q6P5X7 295 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 ATG14Q6ZNE5 492 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 NLRP8Q86W28 1048 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 GALNT13Q8IUC8 556 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 NDUFAF2Q8N183 169 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 SFRP1Q8N474 314 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 CCDC112Q8NEF3 446 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 MAML1Q92585 1016 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 DPYSL5Q9BPU6 564 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 DDA1Q9BW61 102 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 TDRD1Q9BXT4 1180 aaKnown RBP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 POLR1EQ9GZS1 481 aaKnown RBP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 NAT10Q9H0A0 1025 aaKnown RBP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 RCOR3Q9P2K3 495 aaPredicted RBP12.32□□□□□ -0.44
CPSF3-204ENST00000489403 IL17BQ9UHF5 180 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 ANAPC7Q9UJX3 599 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 CHKBQ9Y259 395 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 MYO18BQ8IUG5 2567 aa12.32□□□□□ -0.44
CPSF3-204ENST00000489403 EFCAB7A8K855 629 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 GOLGA6L22H0YM25 854 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 ARHGAP6O43182 974 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 DNAJC6O75061 913 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 PPFIA2O75334 1257 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 MAP3K6O95382 1288 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 MBD3O95983 291 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 PYGLP06737 847 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 LIFP15018 202 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 ARSEP51690 589 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 EPHB1P54762 984 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 GALNT2Q10471 571 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 LRP8Q14114 963 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 FIGNQ5HY92 759 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.31□□□□□ -0.44
CPSF3-204ENST00000489403 FAM129CQ86XR2 697 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 LRRC49Q8IUZ0 686 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.31□□□□□ -0.44
CPSF3-204ENST00000489403 IL22RA1Q8N6P7 574 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 BMPERQ8N8U9 685 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 EXD1Q8NHP7 514 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 FAM71BQ8TC56 605 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 AHCYL2Q96HN2 611 aaKnown RBP12.31□□□□□ -0.44
CPSF3-204ENST00000489403 WDR24Q96S15 920 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 SLC38A3Q99624 504 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 RIOK2Q9BVS4 552 aaKnown RBP12.31□□□□□ -0.44
CPSF3-204ENST00000489403 NUP85Q9BW27 656 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 ZMYND15Q9H091 742 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 SLC25A18Q9H1K4 315 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 GEMIN8Q9NWZ8 242 aaKnown RBP12.31□□□□□ -0.44
CPSF3-204ENST00000489403 SLC39A1Q9NY26 324 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 PDP2Q9P2J9 529 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 IP6K2Q9UHH9 426 aa12.31□□□□□ -0.44
CPSF3-204ENST00000489403 B4E171 279 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 MATN3O15232 486 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 DUX1O43812 170 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 RAD1O60671 282 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 CLDN7O95471 211 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 ASMTLO95671 621 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 PRLP01236 227 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 ATP1A1P05023 1023 aaKnown RBP12.3□□□□□ -0.44
CPSF3-204ENST00000489403 TSPAN7P41732 249 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 ZNF165P49910 485 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 RAB15P59190 212 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 HHEXQ03014 270 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 DPYSL3Q14195 570 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 NR1I3Q14994 352 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 PAFAH1B3Q15102 231 aaKnown RBP12.3□□□□□ -0.44
CPSF3-204ENST00000489403 ATP13A4Q4VNC1 1196 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 CCDC122Q5T0U0 273 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 DCAF12Q5T6F0 453 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 ANKS6Q68DC2 871 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 TIGD7Q6NT04 549 aaPredicted RBP12.3□□□□□ -0.44
CPSF3-204ENST00000489403 BORAQ6PGQ7 559 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 CHST15Q7LFX5 561 aaPredicted RBP12.3□□□□□ -0.44
CPSF3-204ENST00000489403 CPNE8Q86YQ8 564 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 NRSN1Q8IZ57 195 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 CACNA2D3Q8IZS8 1091 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 OR10G6Q8NH81 332 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 VPS18Q9P253 973 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 DNPEPQ9ULA0 475 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 CNOT6Q9ULM6 557 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms