RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-233	ENST00000489352	SPOCK3	Q9BQ16	436 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	WDR77	Q9BQA1	342 aa	Predicted RBP	11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	TEX101	Q9BY14	249 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	WASH6P	Q9NQA3	447 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	SEMA3G	Q9NS98	782 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	PIGV	Q9NUD9	493 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	KCTD5	Q9NXV2	234 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352	TCFL5	Q9UL49	500 aa		11.42	□□□□□ -0.58
HDAC6-233	ENST00000489352		A8MX80	341 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	RNF225	M0QZC1	329 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	CPNE3	O75131	537 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	IGHE	P01854	428 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	C9	P02748	559 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	ESRRA	P11474	423 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	ARCN1	P48444	511 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	ARL4D	P49703	201 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	CASP6	P55212	293 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	KCNK10	P57789	538 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	POLR2L	P62875	67 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352		Q0VFX4	171 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	LRP8	Q14114	963 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	SLC39A14	Q15043	492 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	DENND1B	Q6P3S1	775 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	TMEM207	Q6UWW9	146 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	BIVM	Q86UB2	503 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	BPHL	Q86WA6	291 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	DNAAF5	Q86Y56	855 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	GALNT13	Q8IUC8	556 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	CBARP	Q8N350	705 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	PPM1K	Q8N3J5	372 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	BCORP1	Q8N888	145 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	SIDT2	Q8NBJ9	832 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	NUDT8	Q8WV74	236 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	CASKIN2	Q8WXE0	1202 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	ZNF641	Q96N77	438 aa	Predicted RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	FOXC2	Q99958	501 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	MAGEH1	Q9H213	219 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	ASNSD1	Q9NWL6	643 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	DNAI1	Q9UI46	699 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	SH3BGRL2	Q9UJC5	107 aa		11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	NOVA2	Q9UNW9	492 aa	Known RBP	11.41	□□□□□ -0.58
HDAC6-233	ENST00000489352	C19orf84	I3L1E1	186 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	PEX12	O00623	359 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	INSIG1	O15503	277 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	POLR2D	O15514	142 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	SNX2	O60749	519 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	UBXN7	O94888	489 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	EPB41	P11171	864 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	CA5A	P35218	305 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	TSFM	P43897	325 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	CXCR3	P49682	368 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	IST1	P53990	364 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	MARS	P56192	900 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	GSDMD	P57764	484 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	CDK3	Q00526	305 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	DEUP1	Q05D60	604 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	FOXD4	Q12950	439 aa	Predicted RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	LAMB3	Q13751	1172 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	DCAF10	Q5QP82	559 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	DENND2C	Q68D51	928 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	RAET1G	Q6H3X3	334 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	RWDD4	Q6NW29	188 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	IYD	Q6PHW0	289 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	GFRAL	Q6UXV0	394 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	MARK2	Q7KZI7	788 aa	Known RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	TMEM126B	Q8IUX1	230 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	PELI3	Q8N2H9	469 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	LZTR1	Q8N653	840 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	ZBTB2	Q8N680	514 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	UBR7	Q8N806	425 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	VOPP1	Q96AW1	172 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	ZDHHC12	Q96GR4	267 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	CNDP1	Q96KN2	507 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	EXOC2	Q96KP1	924 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	IP6K3	Q96PC2	410 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	MLPH	Q9BV36	600 aa	Predicted RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	NLN	Q9BYT8	704 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	CHST8	Q9H2A9	424 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	ZNF552	Q9H707	407 aa	Predicted RBP	11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	CBX8	Q9HC52	389 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	SLC17A4	Q9Y2C5	497 aa		11.4	□□□□□ -0.58
HDAC6-233	ENST00000489352	TSPAN11	A1L157	253 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	KDELR3	O43731	214 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	CREB3	O43889	395 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	RAMP2	O60895	175 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	SCRG1	O75711	98 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	CLDN14	O95500	239 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	RAB40AL	P0C0E4	278 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	NELFE	P18615	380 aa	Known RBP	11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	AGA	P20933	346 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	DNAJA1	P31689	397 aa	Known RBP	11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	OTX2	P32243	289 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	KIR3DL1	P43629	444 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	SULT1E1	P49888	294 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	SNX16	P57768	344 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	OTUD4	Q01804	1114 aa	Known RBP	11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	ACY1	Q03154	408 aa		11.39	□□□□□ -0.59
HDAC6-233	ENST00000489352	ZNF169	Q14929	603 aa	Predicted RBP	11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms