RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 PCDH8O95206 1070 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 LRATO95237 230 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 OR56A5P0C7T3 313 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 PRSS56P0CW18 603 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SOAT1P35610 550 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 CHRNB3Q05901 458 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 NIPAL4Q0D2K0 466 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ACAP2Q15057 778 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 TAZQ16635 292 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF789Q5FWF6 425 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 TRAPPC5Q8IUR0 188 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SPNS2Q8IVW8 549 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 RHBDL2Q9NX52 303 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 SH3BP4Q9P0V3 963 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 DOCK5Q9H7D0 1870 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF831Q5JPB2 1677 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ATP6V1C1P21283 382 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 CREB5Q02930 508 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF296Q8WUU4 475 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 NSMCE2Q96MF7 247 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 RTKNQ9BST9 563 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 MARCH4Q9P2E8 410 aaPredicted RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 STX18Q9P2W9 335 aaKnown RBP13.19□□□□□ -0.3
HMGN1-216ENST00000486741 POMPQ9Y244 141 aa13.19□□□□□ -0.3
HMGN1-216ENST00000486741 ZCWPW2A0A1B0GU75 182 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 KLF11O14901 512 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 PIP5K1BO14986 540 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 CEP290O15078 2479 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 C8AP07357 584 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 ETV4P43268 484 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 ECT2LQ008S8 904 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 CLCQ05315 142 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 SCAPQ12770 1279 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 TRIM60Q495X7 471 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 SWT1Q5T5J6 900 aaKnown RBP13.18□□□□□ -0.3
HMGN1-216ENST00000486741 TIFABQ6ZNK6 161 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 FBXO27Q8NI29 283 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 COPS8Q99627 209 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 PCDHAC1Q9H158 963 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 FBRSL1Q9HCM7 1045 aaKnown RBP13.18□□□□□ -0.3
HMGN1-216ENST00000486741 SPAG4Q9NPE6 437 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 LIMD1Q9UGP4 676 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 TLL2Q9Y6L7 1015 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 KIAA1217Q5T5P2 1943 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 OR4F21O95013 312 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 FBXO30Q8TB52 745 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 MCOLN3Q8TDD5 553 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 PPM1MQ96MI6 270 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 HAUS8Q9BT25 410 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 NOL11Q9H8H0 719 aaKnown RBP13.18□□□□□ -0.3
HMGN1-216ENST00000486741 S100A14Q9HCY8 104 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 ULK1O75385 1050 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 CLPTM1O96005 669 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 GLUD1P00367 558 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 ALBP02768 609 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 TRAF2Q12933 501 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 FAM171BQ6P995 826 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 CCDC149Q6ZUS6 474 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 CYP4V2Q6ZWL3 525 aaPredicted RBP13.18□□□□□ -0.3
HMGN1-216ENST00000486741 TXNDC5Q8NBS9 432 aaKnown RBP13.18□□□□□ -0.3
HMGN1-216ENST00000486741 SKA1Q96BD8 255 aa13.18□□□□□ -0.3
HMGN1-216ENST00000486741 TBC1D3BA6NDS4 549 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.17□□□□□ -0.3
HMGN1-216ENST00000486741 CDC7O00311 574 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 COCHO43405 550 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 TLL1O43897 1013 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 MAGEC1O60732 1142 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 MTX2O75431 263 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 NTRK1P04629 796 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 FASP25445 335 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 PEX2P28328 305 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 ATP6V0D1P61421 351 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 ZNF534Q76KX8 674 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 COLGALT2Q8IYK4 626 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 TMEM199Q8N511 208 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 FAM120BQ96EK7 910 aaKnown RBP13.17□□□□□ -0.3
HMGN1-216ENST00000486741 PANX3Q96QZ0 392 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 MIPEPQ99797 713 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 ABCB8Q9NUT2 735 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 LRRC37AA6NMS7 1700 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 C2orf78A6NCI8 922 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 EPB42P16452 691 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 ITPKAP23677 461 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 IRF8Q02556 426 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 SERINC3Q13530 473 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 METTL21CQ5VZV1 264 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 FBXL19Q6PCT2 694 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 LYSMD3Q7Z3D4 306 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 MRPL10Q7Z7H8 261 aaKnown RBP13.17□□□□□ -0.3
HMGN1-216ENST00000486741 SERPINA9Q86WD7 417 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 RALGPS2Q86X27 583 aaPredicted RBP13.17□□□□□ -0.3
HMGN1-216ENST00000486741 CMTM8Q8IZV2 173 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 ASB2Q96Q27 587 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 SMIM14Q96QK8 99 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 ATG10Q9H0Y0 220 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 CACYBPQ9HB71 228 aaKnown RBP13.17□□□□□ -0.3
HMGN1-216ENST00000486741 PDP2Q9P2J9 529 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 GNPTGQ9UJJ9 305 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 PPM1HQ9ULR3 514 aa13.17□□□□□ -0.3
HMGN1-216ENST00000486741 TDRKHQ9Y2W6 561 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms