RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 THOP1P52888 689 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CEACAM7Q14002 265 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 VEPH1Q14D04 833 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SPATS1Q496A3 300 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 COQ5Q5HYK3 327 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 Q6ZNB5 142 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CHCHD4Q8N4Q1 142 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 OR4K2Q8NGD2 314 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RIN3Q8TB24 985 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SH3RF2Q8TEC5 729 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 ZNF689Q96CS4 500 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 ASB9Q96DX5 294 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 BIRC8Q96P09 236 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 LBHD1Q9BQE6 289 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 NUSAP1Q9BXS6 441 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 HIPK3Q9H422 1215 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PCDHGA7Q9Y5G6 932 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 H3BMM5 538 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 GREM1O60565 184 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SUPT7LO94864 414 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RAG1P15918 1043 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CSNK1DP48730 415 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SCNN1BP51168 640 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 GRIK2Q13002 908 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 FASTKQ14296 549 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RNF219Q5W0B1 726 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 EFL1Q7Z2Z2 1120 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 TCEAL8Q8IYN2 117 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SLC39A11Q8N1S5 342 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 STK40Q8N2I9 435 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PTGR2Q8N8N7 351 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 HJURPQ8NCD3 748 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CATSPER1Q8NEC5 780 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 TSPEARQ8WU66 669 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 ROPN1LQ96C74 230 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PPP1R36Q96LQ0 422 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SPON2Q9BUD6 331 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RNF38Q9H0F5 515 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CACNA2D2Q9NY47 1150 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 COLQQ9Y215 455 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 TRIM24O15164 1050 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RHOBTB1O94844 696 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CDK14O94921 469 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 MATN4O95460 622 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 SNRPB2P08579 225 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 DPP6P42658 865 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PPIGQ13427 754 aaKnown RBP eCLIP12.16□□□□□ -0.462e-7■■□□□ 12.1
PTPRF-212ENST00000477970 PTPRCAPQ14761 206 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PABPC1LQ4VXU2 614 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PQLC1Q8N2U9 271 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 GRIN3AQ8TCU5 1115 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 KCNJ9Q92806 393 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 CCDC124Q96CT7 223 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RMDN1Q96DB5 314 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 PDLIM5Q96HC4 596 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 RC3H2Q9HBD1 1191 aaKnown RBP12.16□□□□□ -0.46
PTPRF-212ENST00000477970 DENND4CQ5VZ89 1909 aa12.16□□□□□ -0.46
PTPRF-212ENST00000477970 NDUFS3O75489 264 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 SKAP2O75563 359 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-212ENST00000477970 TMCC1O94876 653 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 ITGB8P26012 769 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 AP1S1P61966 158 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 SH3BP2P78314 561 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 FPGSQ05932 587 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 LCP2Q13094 533 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 REP15Q6BDI9 236 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 OGFOD2Q6N063 350 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 GPR153Q6NV75 609 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 PHYKPLQ8IUZ5 450 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 TMEM199Q8N511 208 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 ZNF483Q8TF39 744 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-212ENST00000477970 CCT7Q99832 543 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 CCDC68Q9H2F9 335 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 MAGEE1Q9HCI5 957 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 ACTL7AQ9Y615 435 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 AZIN1O14977 448 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 VPS26AO75436 327 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 SRP72O76094 671 aaKnown RBP12.15□□□□□ -0.46
PTPRF-212ENST00000477970 SLC4A1P02730 911 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 C8BP07358 591 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 PKMP14618 531 aaKnown RBP12.15□□□□□ -0.46
PTPRF-212ENST00000477970 SYN1P17600 705 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 PTGER3P43115 390 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 PLK1P53350 603 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 TRAF2Q12933 501 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 FLOT2Q14254 428 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 LRIT3Q3SXY7 679 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 KIAA1841Q6NSI8 718 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 CHRDL2Q6WN34 429 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 TMEM150AQ86TG1 271 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 METTL3Q86U44 580 aaKnown RBP12.15□□□□□ -0.46
PTPRF-212ENST00000477970 DCAF4L2Q8NA75 395 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 GDPD5Q8WTR4 605 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 ALG14Q96F25 216 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 SCOCQ9UIL1 159 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 DNAJC15Q9Y5T4 150 aa12.15□□□□□ -0.46
PTPRF-212ENST00000477970 PRSS51A0A1B0GVH4 220 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 FBP2O00757 339 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 KIF1CO43896 1103 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ESR1P03372 595 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms