RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ARHGEF6Q15052 776 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 CCNYL2Q5T2Q4 361 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 NAA35Q5VZE5 725 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 FAAH2Q6GMR7 532 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 CES5AQ6NT32 575 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 FAM180BQ6P0A1 224 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 C1orf122Q6ZSJ8 110 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 PRSS45Q7RTY3 260 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 ADGRG6Q86SQ4 1221 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 NOXA1Q86UR1 476 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 RFFLQ8WZ73 363 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF414Q96IQ9 312 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 LRR1Q96L50 414 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 CD180Q99467 661 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 TTYH1Q9H313 450 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 CNGB3Q9NQW8 809 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 SMC4Q9NTJ3 1288 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 ALKBH4Q9NXW9 302 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 PADI1Q9ULC6 663 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 OR2W1Q9Y3N9 320 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 IGKV6D-41A0A0C4DH26 115 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 ARHGAP10A1A4S6 786 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 TBX18O95935 607 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 CD48P09326 243 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 ERVK-10P10266 1014 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 GNB3P16520 340 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 SP100P23497 879 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 CORO1AP31146 461 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 USP8P40818 1118 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 TERF1P54274 439 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 CDH15P55291 814 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 LMOD3Q0VAK6 560 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 CAMK1Q14012 370 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 FAM69AQ5T7M9 428 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC22A25Q6T423 547 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 ASB18Q6ZVZ8 466 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 MOB3CQ70IA8 216 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 ZCCHC10Q8TBK6 192 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 MAGEC3Q8TD91 643 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 HDAC2Q92769 488 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 CDCA5Q96FF9 252 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 ZC3HAV1LQ96H79 300 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 EYA3Q99504 573 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 INTS2Q9H0H0 1204 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC7A10Q9NS82 523 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 IRAK4Q9NWZ3 460 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 FAF1Q9UNN5 650 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 NAALADL1Q9UQQ1 740 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 DLGAP4Q9Y2H0 992 aa3.08□□□□□ -1.92
CCDC88A-212ENST00000474059 KIAA1210Q9ULL0 1709 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 GOLGA6L10A0A0M3HER8 536 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 TEX22C9J3V5 150 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 AKR1B15C9JRZ8 316 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 TNPO2O14787 897 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 PER2O15055 1255 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 F9P00740 461 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 URODP06132 367 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 CYC1P08574 325 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 PRSS56P0CW18 603 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF26P17031 533 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 PAFAH1B1P43034 410 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 GPD2P43304 727 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 RXRGP48443 463 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 IRX6P78412 446 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 FOXD4Q12950 439 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 PRICKLE4Q2TBC4 344 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 EIF2S3LQ2VIR3 472 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF766Q5HY98 468 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 WDR38Q5JTN6 314 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 C17orf99Q6UX52 265 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 R3HCC1LQ7Z5L2 792 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 TBC1D1Q86TI0 1168 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 ARMC8Q8IUR7 673 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF473Q8WTR7 871 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 FCAMRQ8WWV6 532 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 RAB40AQ8WXH6 277 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 CNOT9Q92600 299 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 KXD1Q9BQD3 176 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 LBHD1Q9BQE6 289 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 USP44Q9H0E7 712 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 EPHX3Q9H6B9 360 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 ERVMER34-1Q9H9K5 563 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 MKKSQ9NPJ1 570 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC52A3Q9NQ40 469 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 BEX4Q9NWD9 120 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC25A10Q9UBX3 287 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF318Q5VUA4 2279 aa3.07□□□□□ -1.92
CCDC88A-212ENST00000474059 A0A1W2PPH5 198 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 GAGE10A6NGK3 116 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 SMIM1B2RUZ4 78 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 TSPAN4O14817 238 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 PCDH7O60245 1069 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 KRTAP5-8O75690 187 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 RTN3O95197 1032 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 CHRM4P08173 479 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 PTPN2P17706 415 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 CAPN3P20807 821 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 GNL1P36915 607 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 BLKP51451 505 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms