RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C6orf203Q9P0P8 240 aaPredicted RBP19.02■□□□□ 0.63
VIM-203ENST00000469543 APPL1Q9UKG1 709 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 RANBP2P49792 3224 aaKnown RBP19.01■□□□□ 0.63
VIM-203ENST00000469543 NPEPPSL1A6NEC2 478 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 CRTAMO95727 393 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 INHBCP55103 352 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 PLA2G4EQ3MJ16 856 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 DEFB128Q7Z7B8 93 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 SLCO4A1Q96BD0 722 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 TUBGCP3Q96CW5 907 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 SLC22A12Q96S37 553 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 MAP10Q9P2G4 905 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 RNF112Q9ULX5 631 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 CHD7Q9P2D1 2997 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 A0A0J9YYE9 177 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 A0A1B0GTW7 788 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 ARVCFO00192 962 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 TRIM38O00635 465 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 ECI2O75521 394 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 STC2O76061 302 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 CD160O95971 181 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 EPOP01588 193 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 INHAP05111 366 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 NELFEP18615 380 aaKnown RBP19.01■□□□□ 0.63
VIM-203ENST00000469543 GPX3P22352 226 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 C18orf21Q32NC0 220 aaPredicted RBP19.01■□□□□ 0.63
VIM-203ENST00000469543 RNF219Q5W0B1 726 aaPredicted RBP19.01■□□□□ 0.63
VIM-203ENST00000469543 GALNT7Q86SF2 657 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 GPR150Q8NGU9 434 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 EEF1AKMT1Q8WVE0 214 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 ASB9Q96DX5 294 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 MUC3BQ9H195 1237 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 UNC93B1Q9H1C4 597 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 SEPT3Q9UH03 358 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 EGFL7Q9UHF1 273 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 ZNF225Q9UK10 706 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 AGO1Q9UL18 857 aaKnown RBP19.01■□□□□ 0.63
VIM-203ENST00000469543 RAI2Q9Y5P3 530 aa19.01■□□□□ 0.63
VIM-203ENST00000469543 PRSS51A0A1B0GVH4 220 aa19■□□□□ 0.63
VIM-203ENST00000469543 MOXD2PA6NHM9 499 aa19■□□□□ 0.63
VIM-203ENST00000469543 K7ERQ8 282 aa19■□□□□ 0.63
VIM-203ENST00000469543 BTN3A1O00481 513 aa19■□□□□ 0.63
VIM-203ENST00000469543 AZIN1O14977 448 aa19■□□□□ 0.63
VIM-203ENST00000469543 TRIM24O15164 1050 aa19■□□□□ 0.63
VIM-203ENST00000469543 HGFP14210 728 aa19■□□□□ 0.63
VIM-203ENST00000469543 MZF1P28698 734 aaPredicted RBP19■□□□□ 0.63
VIM-203ENST00000469543 RFTN1Q14699 578 aaPredicted RBP19■□□□□ 0.63
VIM-203ENST00000469543 IYDQ6PHW0 289 aa19■□□□□ 0.63
VIM-203ENST00000469543 TMEM102Q8N9M5 508 aaPredicted RBP19■□□□□ 0.63
VIM-203ENST00000469543 EID2BQ96D98 161 aa19■□□□□ 0.63
VIM-203ENST00000469543 TDRD1Q9BXT4 1180 aaKnown RBP19■□□□□ 0.63
VIM-203ENST00000469543 MAGEH1Q9H213 219 aa19■□□□□ 0.63
VIM-203ENST00000469543 VCX3BQ9H321 246 aa19■□□□□ 0.63
VIM-203ENST00000469543 SCUBE2Q9NQ36 999 aa19■□□□□ 0.63
VIM-203ENST00000469543 NLE1Q9NVX2 485 aaPredicted RBP19■□□□□ 0.63
VIM-203ENST00000469543 A8MX80 341 aa19■□□□□ 0.63
VIM-203ENST00000469543 PEX1O43933 1283 aa19■□□□□ 0.63
VIM-203ENST00000469543 NDUFS3O75489 264 aa19■□□□□ 0.63
VIM-203ENST00000469543 HMGA1P17096 107 aaKnown RBP19■□□□□ 0.63
VIM-203ENST00000469543 CAPN3P20807 821 aa19■□□□□ 0.63
VIM-203ENST00000469543 SLC11A2P49281 568 aa19■□□□□ 0.63
VIM-203ENST00000469543 ARF5P84085 180 aa19■□□□□ 0.63
VIM-203ENST00000469543 CLCQ05315 142 aa19■□□□□ 0.63
VIM-203ENST00000469543 SATL1Q86VE3 508 aa19■□□□□ 0.63
VIM-203ENST00000469543 FUBP1Q96AE4 644 aaKnown RBP19■□□□□ 0.63
VIM-203ENST00000469543 VPS33AQ96AX1 596 aa19■□□□□ 0.63
VIM-203ENST00000469543 FAR2Q96K12 515 aa19■□□□□ 0.63
VIM-203ENST00000469543 SPAG4Q9NPE6 437 aa19■□□□□ 0.63
VIM-203ENST00000469543 SNX13Q9Y5W8 968 aa19■□□□□ 0.63
VIM-203ENST00000469543 C15orf38-AP3S2A0A0A6YYH1 394 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 PQBP1O60828 265 aaKnown RBP18.99■□□□□ 0.63
VIM-203ENST00000469543 RHOCP08134 193 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 CTPS1P17812 591 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 CR2P20023 1033 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 MC4RP32245 332 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 CA5AP35218 305 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 ATN1P54259 1190 aaPredicted RBP18.99■□□□□ 0.63
VIM-203ENST00000469543 ZXDBP98169 803 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 SEMG2Q02383 582 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 GALNT1Q10472 559 aaPredicted RBP18.99■□□□□ 0.63
VIM-203ENST00000469543 C6orf10Q5SRN2 563 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 ATXN7L2Q5T6C5 722 aaPredicted RBP18.99■□□□□ 0.63
VIM-203ENST00000469543 ARPINQ7Z6K5 226 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 PDP2Q9P2J9 529 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 AP4B1Q9Y6B7 739 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 SCN5AQ14524 2016 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 ANKRD66B4E2M5 251 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 KDELR3O43731 214 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 GKP32189 559 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 TWF1Q12792 350 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 TRAF2Q12933 501 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 TYSND1Q2T9J0 566 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 ZRANB3Q5FWF4 1079 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 RARS2Q5T160 578 aaKnown RBP18.99■□□□□ 0.63
VIM-203ENST00000469543 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.99■□□□□ 0.632e-10■■■■■ 45.9
VIM-203ENST00000469543 ANKS3Q6ZW76 656 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 AFAP1L2Q8N4X5 818 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 SLC43A3Q8NBI5 491 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 AUTS2Q8WXX7 1259 aa18.99■□□□□ 0.63
VIM-203ENST00000469543 NOL11Q9H8H0 719 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms