RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ACTRT1Q8TDG2 376 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 OXNAD1Q96HP4 312 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 ZNF578Q96N58 590 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 APOBEC3BQ9UH17 382 aaKnown RBP17.69■□□□□ 0.42
COL7A1-205ENST00000465238 SAR1BQ9Y6B6 198 aa17.69■□□□□ 0.42
COL7A1-205ENST00000465238 EME2A4GXA9 379 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GOLGA6CA6NDK9 693 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GOLGA6BA6NDN3 693 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 NPIPB15A6NHN6 443 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-205ENST00000465238 ZNF185O15231 689 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 USP12O75317 370 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 DXOO77932 396 aaKnown RBP17.68■□□□□ 0.42
COL7A1-205ENST00000465238 NDST3O95803 873 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 IFNB1P01574 187 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GOLGA6DP0CG33 693 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 RP1P56715 2156 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 ACOX1Q15067 660 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 CDKN3Q16667 212 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 PARP6Q2NL67 630 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 DEFB133Q30KQ1 61 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 P3H1Q32P28 736 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 DENND2CQ68D51 928 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 KDELC1Q6UW63 502 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 MACC1Q6ZN28 852 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GSTA5Q7RTV2 222 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 PHACTR4Q8IZ21 702 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 PRELID2Q8N945 189 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 CCDC89Q8N998 374 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 TP53I13Q8NBR0 393 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-205ENST00000465238 IPMKQ8NFU5 416 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GLMNQ92990 594 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 LRRC45Q96CN5 670 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 RTP4Q96DX8 246 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 TRIB3Q96RU7 358 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 AP1M1Q9BXS5 423 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 SLC13A1Q9BZW2 595 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GOLGA6AQ9NYA3 693 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 COQ6Q9Y2Z9 468 aa17.68■□□□□ 0.42
COL7A1-205ENST00000465238 GOLGA6L10A0A0M3HER8 536 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 CPED1A4D0V7 1026 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 CAPN8A6NHC0 703 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 LMO7DNF2Z398 122 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 HEXIM1O94992 359 aaKnown RBP17.67■□□□□ 0.42
COL7A1-205ENST00000465238 EPOP01588 193 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 MPOP05164 745 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 CASQ1P31415 396 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 LSSP48449 732 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 RPIAP49247 311 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 PCBP4P57723 403 aaKnown RBP17.67■□□□□ 0.42
COL7A1-205ENST00000465238 ETF1P62495 437 aaKnown RBP17.67■□□□□ 0.42
COL7A1-205ENST00000465238 GABREP78334 506 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 PTPRRQ15256 657 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 NR0B2Q15466 257 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 CNGA3Q16281 694 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 PRRT3Q5FWE3 981 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 GUSBP11Q6P575 273 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 CRTC1Q6UUV9 634 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 EFL1Q7Z2Z2 1120 aaKnown RBP17.67■□□□□ 0.42
COL7A1-205ENST00000465238 RBFAQ8N0V3 343 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 ZNF248Q8NDW4 579 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 GRAMD1AQ96CP6 724 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 MRGPRX2Q96LB1 330 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 FCRL3Q96P31 734 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-205ENST00000465238 SMIM14Q96QK8 99 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 BOCQ9BWV1 1114 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 FSD1LQ9BXM9 530 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 POLR1BQ9H9Y6 1135 aa17.67■□□□□ 0.42
COL7A1-205ENST00000465238 MBNL1Q9NR56 388 aaKnown RBP17.67■□□□□ 0.42
COL7A1-205ENST00000465238 MGAQ8IWI9 3026 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 LOC285095A0A1B0GVY8 99 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 PSMD11O00231 422 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 RECQL5O94762 991 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-205ENST00000465238 ANXA6P08133 673 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 ZNF30P17039 623 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 LHCGRP22888 699 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 KCNJ1P48048 391 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 BLKP51451 505 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 ERVPABLB-1P60509 514 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 PPARDQ03181 441 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 TLE3Q04726 772 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 LRRC14Q15048 493 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 ISXQ2M1V0 245 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 C6orf132Q5T0Z8 1188 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 FAXCQ5TGI0 409 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 TSPAN33Q86UF1 283 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 SPACA3Q8IXA5 215 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 SLC25A41Q8N5S1 370 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 NAT6Q93015 286 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 MAGOHBQ96A72 148 aaKnown RBP17.66■□□□□ 0.42
COL7A1-205ENST00000465238 LYSMD1Q96S90 227 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 SRPK1Q96SB4 655 aaKnown RBP17.66■□□□□ 0.42
COL7A1-205ENST00000465238 LRRC61Q9BV99 259 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 TCEAL2Q9H3H9 227 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-205ENST00000465238 KCTD5Q9NXV2 234 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 SMARCAL1Q9NZC9 954 aa17.66■□□□□ 0.42
COL7A1-205ENST00000465238 TK2O00142 265 aa17.65■□□□□ 0.42
COL7A1-205ENST00000465238 PSMD3O43242 534 aa17.65■□□□□ 0.42
COL7A1-205ENST00000465238 METTL18O95568 372 aa17.65■□□□□ 0.42
COL7A1-205ENST00000465238 HLA-DPA1P20036 260 aa17.65■□□□□ 0.42
COL7A1-205ENST00000465238 C1orf61Q13536 156 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms