RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 CPB2Q96IY4 423 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 PSD2Q9BQI7 771 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 CXCL16Q9H2A7 254 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 RAD21L1Q9H4I0 556 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 SACM1LQ9NTJ5 587 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 EGFL7Q9UHF1 273 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 MAGEB16A2A368 324 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ACKR2O00590 384 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 B4GALT3O60512 393 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 CA3P07451 260 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 S100A1P23297 94 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 EEF1B2P24534 225 aaKnown RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 DNAJB1P25685 340 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ZNF846Q147U1 533 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 USP51Q70EK9 711 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 TP53INP2Q8IXH6 220 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ABHD11Q8NFV4 315 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ROPN1LQ96C74 230 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 MYRFLQ96LU7 910 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ZNF641Q96N77 438 aaPredicted RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 CSF3RQ99062 836 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 APOL2Q9BQE5 337 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 RHOBTB2Q9BYZ6 727 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 C2orf40Q9H1Z8 148 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 IL1RL2Q9HB29 575 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 PRM3Q9NNZ6 103 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 TNFRSF12AQ9NP84 129 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 LINC01553A4QN01 128 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 CLDN25C9JDP6 229 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 INO80B-WBP1J3KQ70 363 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 TPH1P17752 444 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 OXTRP30559 389 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 RPS9P46781 194 aaKnown RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 AFF1P51825 1210 aaKnown RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 DNAJB13P59910 316 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 TUBA3CQ13748 450 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 SOWAHAQ2M3V2 549 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 PERM1Q5SV97 790 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 THOC7Q6I9Y2 204 aaKnown RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 LCN8Q6JVE9 175 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 BTLAQ7Z6A9 289 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 FAM131BQ86XD5 332 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ZDHHC17Q8IUH5 632 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 ADGRG5Q8IZF4 528 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 HPS1Q92902 700 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 NRBF2Q96F24 287 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 SH3YL1Q96HL8 342 aaPredicted RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 ZMAT2Q96NC0 199 aaKnown RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 MRPL46Q9H2W6 279 aaKnown RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 NSMCE4AQ9NXX6 385 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 RCOR3Q9P2K3 495 aaPredicted RBP8.55□□□□□ -1.04
HPS4-206ENST00000439453 FZD10Q9ULW2 581 aa8.55□□□□□ -1.04
HPS4-206ENST00000439453 PLXNA3P51805 1871 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 A0A0U1RQF3 1178 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 CCDC78A2IDD5 438 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 NEMP2A6NFY4 417 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 PFDN6O15212 129 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 SNAP29O95721 258 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 PTPN3P26045 913 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 EEF1DP29692 281 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 NPY2RP49146 381 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 SNX16P57768 344 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 KCNJ8Q15842 424 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 PHKG1Q16816 387 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 NANOGNBQ7Z5D8 188 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 ACOT1Q86TX2 421 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 PIGZQ86VD9 579 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 RETREG3Q86VR2 466 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 NT5DC4Q86YG4 428 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 NPAS4Q8IUM7 802 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 CEP97Q8IW35 865 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 GOLM1Q8NBJ4 401 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 TRPV3Q8NET8 790 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 MAGEE2Q8TD90 523 aaPredicted RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 EFHD2Q96C19 240 aaPredicted RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 CASD1Q96PB1 797 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 LHPPQ9H008 270 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 SLC27A5Q9Y2P5 690 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 RBMX2Q9Y388 322 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 ST14Q9Y5Y6 855 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 B4GAT1O43505 415 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 AHSGP02765 367 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 STAG3L1P0CL83 205 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 ATP5F1P24539 256 aaPredicted RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 HPCAL1P37235 193 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 RAB10P61026 200 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 ADARB1P78563 741 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 BNIP2Q12982 314 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 TMEM214Q6NUQ4 689 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 SLC24A5Q71RS6 500 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 MRPL10Q7Z7H8 261 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 FUNDC1Q8IVP5 155 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 SFRP1Q8N474 314 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 RNF139Q8WU17 664 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 MRPL57Q9BQC6 102 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 ELAC1Q9H777 363 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 CHST12Q9NRB3 414 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 ACTR3BQ9P1U1 418 aa8.54□□□□□ -1.04
HPS4-206ENST00000439453 LSM1O15116 133 aaKnown RBP8.54□□□□□ -1.04
HPS4-206ENST00000439453 SYNCRIPO60506 623 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms