RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MCIDASD6RGH6 385 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 ENPP3O14638 875 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 TNFRSF21O75509 655 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 SERPINB7O75635 380 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 CES1P23141 567 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 QPCTQ16769 361 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 MPPE1Q53F39 396 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 INTS6LQ5JSJ4 861 aaKnown RBP17.14■□□□□ 0.33
PTPRF-209ENST00000438120 PHYKPLQ8IUZ5 450 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 KLHL31Q9H511 634 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 ARL8BQ9NVJ2 186 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 RAB23Q9ULC3 237 aa17.14■□□□□ 0.33
PTPRF-209ENST00000438120 MED22Q15528 200 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ALG11Q2TAA5 492 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 LSM12Q3MHD2 195 aaKnown RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 AKIRIN2Q53H80 203 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 GALNT5Q7Z7M9 940 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 AADATQ8N5Z0 425 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 OR7D4Q8NG98 312 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 TEX47Q8TBZ9 253 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 NARS2Q96I59 477 aaKnown RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF354BQ96LW1 612 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 SLC28A3Q9HAS3 691 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 EME2A4GXA9 379 aaPredicted RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 GNRH1P01148 92 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 RCVRNP35243 200 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 AIF1P55008 147 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 CPTPQ5TA50 214 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 CLEC6AQ6EIG7 209 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 CAPN13Q6MZZ7 669 aaPredicted RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 MZT2AQ6P582 158 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 CHSY3Q70JA7 882 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 DQX1Q8TE96 717 aaKnown RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 MYDGFQ969H8 173 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 TBATAQ96M53 351 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 LPIN3Q9BQK8 851 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 BRINP2Q9C0B6 783 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 HMG20AQ9NP66 347 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 H3BM21 787 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 TIPRLO75663 272 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 BNIP2Q12982 314 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 RPTNQ6XPR3 784 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 OR14C36Q8NHC7 312 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 FEM1CQ96JP0 617 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PPM1MQ96MI6 270 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PLEKHG4BQ96PX9 1271 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ADGRE2Q9UHX3 823 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PDE9AO76083 593 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 HNRNPH3P31942 346 aaKnown RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PTPN5P54829 565 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ADARP55265 1226 aaKnown RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ANXA8L1Q5VT79 327 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ZBTB2Q8N680 514 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF563Q8TA94 476 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 MCRS1Q96EZ8 462 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PCED1BQ96HM7 432 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 Q96MT0 163 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF607Q96SK3 696 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 COQ7Q99807 217 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 GCATO75600 419 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 APODP05090 189 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PKMP14618 531 aaKnown RBP17.13■□□□□ 0.33
PTPRF-209ENST00000438120 SMPD1P17405 629 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 PYDC2Q56P42 97 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 VWA5B1Q5TIE3 1220 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 GPR107Q5VW38 600 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 MON1BQ7L1V2 547 aa17.13■□□□□ 0.33
PTPRF-209ENST00000438120 CLUHO75153 1309 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 ARL5CA6NH57 179 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 LAG3P18627 525 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 PARP15Q460N3 678 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 PPP1R15BQ5SWA1 713 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 UPF1Q92900 1129 aaKnown RBP eCLIP17.12■□□□□ 0.331e-6■■■■■ 34.2
PTPRF-209ENST00000438120 PRMT5O14744 637 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-209ENST00000438120 SULT2A1Q06520 285 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 FAM129CQ86XR2 697 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 C12orf56Q8IXR9 622 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 EEF1AKMT1Q8WVE0 214 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 INTS7Q9NVH2 962 aaKnown RBP17.12■□□□□ 0.33
PTPRF-209ENST00000438120 ALAS2P22557 587 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 FOLH1Q04609 750 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 CCNYL2Q5T2Q4 361 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 SPPL2CQ8IUH8 684 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 MFSD3Q96ES6 412 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 HBEGFQ99075 208 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 PSMD13Q9UNM6 376 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 ROBO3Q96MS0 1386 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 EDF1O60869 148 aaKnown RBP17.12■□□□□ 0.33
PTPRF-209ENST00000438120 PAX3P23760 479 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 B3GNT6Q6ZMB0 384 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 PTCHD4Q6ZW05 846 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 ANKRD23Q86SG2 305 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 PSMA8Q8TAA3 256 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 OMA1Q96E52 524 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 HMCESQ96FZ2 354 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 RHOBTB2Q9BYZ6 727 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 RASGRP1O95267 797 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 SEC24AO95486 1093 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 KLHL24Q6TFL4 600 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 VSTM1Q6UX27 236 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms