RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ANKRD20A8PQ5CZ79 823 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 SNAP47Q5SQN1 464 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ZNF648Q5T619 568 aaPredicted RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 ADAMTSL4Q6UY14 1074 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 PRICKLE2Q7Z3G6 844 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 KDELC2Q7Z4H8 507 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 PQLC3Q8N755 202 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 KCTD6Q8NC69 237 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ARRDC2Q8TBH0 407 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 MAML1Q92585 1016 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ART4Q93070 314 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 CEP41Q9BYV8 373 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 POLR1EQ9GZS1 481 aaKnown RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 ZMYND15Q9H091 742 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 BRD8Q9H0E9 1235 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 OCIAD1Q9NX40 245 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ZNHIT2Q9UHR6 403 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ACSL6Q9UKU0 697 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 PCDHGA4Q9Y5G9 962 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 PIEZO2Q9H5I5 2752 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 A0A1W2PQJ5 194 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 CAPN8A6NHC0 703 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 A8MU76 341 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 GYPCP04921 128 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 NFKBIAP25963 317 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 LIMK2P53671 638 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ZBED6P86452 979 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 NR1D2Q14995 579 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 HADHQ16836 314 aaKnown RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 RALGPS1Q5JS13 557 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 CHST15Q7LFX5 561 aaPredicted RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 DTX1Q86Y01 620 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 CCNYQ8ND76 341 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 FAM71BQ8TC56 605 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 SLC37A2Q8TED4 501 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 ARHGAP9Q9BRR9 750 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 TDRD1Q9BXT4 1180 aaKnown RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 CDH19Q9H159 772 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 KCNK4Q9NYG8 393 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 SEPT10Q9P0V9 454 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 IFNKQ9P0W0 207 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 CTTNBP2NLQ9P2B4 639 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 CNOT6Q9ULM6 557 aaKnown RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 CAPN11Q9UMQ6 739 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 KCNK6Q9Y257 313 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 B3GALT1Q9Y5Z6 326 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 BZW2Q9Y6E2 419 aaKnown RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 UNC13CQ8NB66 2214 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 FADS2P1A8MWK0 482 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 KCNK1O00180 336 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 SNX2O60749 519 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 JCHAINP01591 159 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 SLC4A1P02730 911 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 MMP2P08253 660 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 PIRTP0C851 137 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 TEAD1P28347 426 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 CASP14P31944 242 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 CD86P42081 329 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 MAPK9P45984 424 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 NFATC2Q13469 925 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 GALNT3Q14435 633 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 TBR1Q16650 682 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 IFI16Q16666 785 aaKnown RBP11.49□□□□□ -0.57
USP4-204ENST00000416417 ZFYVE27Q5T4F4 411 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 FAM129CQ86XR2 697 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 GALNT13Q8IUC8 556 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 RAPGEF5Q92565 580 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 SYN2Q92777 582 aaPredicted RBP11.49□□□□□ -0.57
USP4-204ENST00000416417 TMEM159Q96B96 161 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 SCARF2Q96GP6 870 aaPredicted RBP11.49□□□□□ -0.57
USP4-204ENST00000416417 COX14Q96I36 57 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 CTRCQ99895 268 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 PCDH9Q9HC56 1237 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 KCTD5Q9NXV2 234 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 AKAP7Q9P0M2 348 aaPredicted RBP11.49□□□□□ -0.57
USP4-204ENST00000416417 RCOR3Q9P2K3 495 aaPredicted RBP11.49□□□□□ -0.57
USP4-204ENST00000416417 TBC1D29Q9UFV1 150 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 NENFQ9UMX5 172 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 PCDHB11Q9Y5F2 797 aa11.49□□□□□ -0.57
USP4-204ENST00000416417 ARHGEF17Q96PE2 2063 aaPredicted RBP11.49□□□□□ -0.57
USP4-204ENST00000416417 C1orf232A0A0U1RR37 186 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 EFCAB7A8K855 629 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 DNAJC6O75061 913 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 PROSCO94903 275 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 ACP5P13686 325 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 ZNF30P17039 623 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 CCNCP24863 283 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 GPR3P46089 330 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 ZBTB17Q13105 803 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 CLCA4Q14CN2 919 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 QPCTQ16769 361 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 ALS2CLQ60I27 953 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 TIGD7Q6NT04 549 aaPredicted RBP11.48□□□□□ -0.57
USP4-204ENST00000416417 NPNTQ6UXI9 565 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 ZNF765Q7L2R6 523 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 NRSN1Q8IZ57 195 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 NDUFAF2Q8N183 169 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 EXD1Q8NHP7 514 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 TAAR9Q96RI9 348 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 SLC39A1Q9NY26 324 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms