RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SNX7Q9UNH6 387 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 PAPPA2Q9BXP8 1791 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MGAT4DA6NG13 374 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TRIM64A6NGJ6 449 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TRIM64BA6NI03 449 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MPOP05164 745 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TARSP26639 723 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 RABIFP47224 123 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 IFNEQ86WN2 208 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 DCUN1D5Q9BTE7 237 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 GPR62Q9BZJ7 368 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 XKR8Q9H6D3 395 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MOV10Q9HCE1 1003 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TMCO1Q9UM00 188 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 C15orf41Q9Y2V0 281 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 OAS3Q9Y6K5 1087 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 A0A1W2PP55 124 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 FOXP2O15409 715 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ATP6V1G1O75348 118 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 CLEC3AO75596 197 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MAPK1P28482 360 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 GALK1P51570 392 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 HSPA14Q0VDF9 509 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ILF2Q12905 390 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 NEK5Q6P3R8 708 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 SHC4Q6S5L8 630 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 CAND1Q86VP6 1230 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 LSMEM2Q8N112 164 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 FBXO39Q8N4B4 442 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF669Q96BR6 464 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MRPL48Q96GC5 212 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TOE1Q96GM8 510 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 FAM83DQ9H4H8 585 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 NPHS2Q9NP85 383 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 FBXW2Q9UKT8 454 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 DUSP10Q9Y6W6 482 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 C5P01031 1676 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 SH3D21A4FU49 640 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 KERAO60938 352 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MFAP3LO75121 409 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF623O75123 536 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 EPN2O95208 641 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 DLDP09622 509 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 DGKAP23743 735 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 IGFALSP35858 605 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 IRAK1P51617 712 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 SSTP61278 116 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 SF3B4Q15427 424 aaKnown RBP eCLIP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 PPP1R26Q5T8A7 1209 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ARHGAP40Q5TG30 622 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 FBXO42Q6P3S6 717 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 LINGO4Q6UY18 593 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 PIM3Q86V86 326 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ANKRD49Q8WVL7 239 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 S100ZQ8WXG8 99 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 OSBPL11Q9BXB4 747 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 CPEB1Q9BZB8 566 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 AGO3Q9H9G7 860 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 UBP1Q9NZI7 540 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 RARRES3Q9UL19 164 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 PHTF1Q9UMS5 762 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 NAALADL1Q9UQQ1 740 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MYBPHLA2RUH7 354 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 A8MUI8 341 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 RBP3P10745 1247 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 IL9P15248 144 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 PFKLP17858 780 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 CD86P42081 329 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 IST1P53990 364 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TMEM119Q4V9L6 283 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ADGRF1Q5T601 910 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 GDPD4Q6W3E5 623 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 C1orf210Q8IVY1 113 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ARHGEF19Q8IW93 802 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 GSPT2Q8IYD1 628 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 PM20D2Q8IYS1 436 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF366Q8N895 744 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 OR6C4Q8NGE1 309 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 BRSK1Q8TDC3 778 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 RMND5BQ96G75 393 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 MAP3K3Q99759 626 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TTYH3Q9C0H2 523 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 RSPH9Q9H1X1 276 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 KCNK12Q9HB15 430 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 STOX2Q9P2F5 926 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF624Q9P2J8 865 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 PISDQ9UG56 409 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 VPS4AQ9UN37 437 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 TBC1D30Q9Y2I9 924 aa7.28□□□□□ -1.24
SCN9A-202ENST00000409435 FCF1Q9Y324 198 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 ATXN2Q99700 1313 aaKnown RBP7.28□□□□□ -1.24
SCN9A-202ENST00000409435 OR6A2O95222 327 aa7.27□□□□□ -1.24
SCN9A-202ENST00000409435 FKBP9O95302 570 aa7.27□□□□□ -1.24
SCN9A-202ENST00000409435 THEGLP0DJG4 465 aa7.27□□□□□ -1.24
SCN9A-202ENST00000409435 LAMP2P13473 410 aa7.27□□□□□ -1.24
SCN9A-202ENST00000409435 CHI3L1P36222 383 aaPredicted RBP7.27□□□□□ -1.24
SCN9A-202ENST00000409435 HSF5Q4G112 596 aaPredicted RBP7.27□□□□□ -1.24
SCN9A-202ENST00000409435 LIN54Q6MZP7 749 aa7.27□□□□□ -1.24
SCN9A-202ENST00000409435 FKBP9P1Q75LS8 142 aa7.27□□□□□ -1.24
SCN9A-202ENST00000409435 TRPV1Q8NER1 839 aa7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms