RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PRDM16Q9HAZ2 1276 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 MTRRQ9UBK8 725 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 FBXO5Q9UKT4 447 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PSME2Q9UL46 239 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 FAM237AA0A1B0GTK4 181 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ALDH7A1P49419 539 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 NFIXQ14938 502 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PPP1R26Q5T8A7 1209 aaPredicted RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 USP30Q70CQ3 517 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 CIR1Q86X95 450 aaPredicted RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 UBR7Q8N806 425 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 SPERTQ8NA61 448 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM39BQ9GZU3 492 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 NXF3Q9H4D5 531 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PXMP2Q9NR77 195 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 GLI2P10070 1586 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 OR2AT4A6NND4 320 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PCDH8O95206 1070 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 TTPAP49638 278 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZFP28Q8NHY6 868 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PPP1R13LQ8WUF5 828 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 SERPINB11Q96P15 392 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZCCHC2Q9C0B9 1178 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PRDM12Q9H4Q4 367 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 XKR8Q9H6D3 395 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ANKRA2Q9H9E1 313 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 TAS2R7Q9NYW3 318 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ABHD14A-ACY1A0A1B0GW23 586 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 DHX15O43143 795 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 KLRC4O43908 158 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 GOT1P17174 413 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ADGRD1Q6QNK2 874 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF34Q8IZ26 560 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZFAND2BQ8WV99 257 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 LINGO1Q96FE5 620 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 CATP04040 527 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 NOS2P35228 1153 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 YAP1P46937 504 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ARFIP1P53367 373 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PPP4CP60510 307 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 CSTF1Q05048 431 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 MERTKQ12866 999 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 CRTC2Q53ET0 693 aaPredicted RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PITRM1Q5JRX3 1037 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 IDNKQ5T6J7 187 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 RETSATQ6NUM9 610 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 CENPSQ8N2Z9 138 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ACER1Q8TDN7 264 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 FAM151AQ8WW52 585 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 IPCEF1Q8WWN9 437 aaPredicted RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZSCAN5AQ9BUG6 496 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 SNCAIPQ9Y6H5 919 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 METTL21EPA6NDL7 271 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 FADS2P1A8MWK0 482 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 REM1O75628 298 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 SLC25A27O95847 323 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PPIBP23284 216 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 SLC18A2Q05940 514 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ARL13AQ5H913 290 aaPredicted RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF781Q8N8C0 355 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 DENND6BQ8NEG7 585 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 EMID1Q96A84 441 aaPredicted RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 RFT1Q96AA3 541 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 C12orf43Q96C57 262 aaKnown RBP11.81□□□□□ -0.52
SYNPO-202ENST00000394243 CST11Q9H112 138 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 TREM1Q9NP99 234 aa11.81□□□□□ -0.52
SYNPO-202ENST00000394243 PRAMEF1O95521 474 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 PCDH1Q08174 1060 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 LSM12Q3MHD2 195 aaKnown RBP11.8□□□□□ -0.52
SYNPO-202ENST00000394243 CLEC6AQ6EIG7 209 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 SMIM5Q71RC9 77 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 SVOPLQ8N434 492 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 WNT8BQ93098 351 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TRMOQ9BU70 441 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 MND1Q9BWT6 205 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 FBXO44Q9H4M3 255 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 LIN28AQ9H9Z2 209 aaKnown RBP11.8□□□□□ -0.52
SYNPO-202ENST00000394243 MFHAS1Q9Y4C4 1052 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 IFNGP01579 166 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 THPOP40225 353 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 BRSK2Q8IWQ3 736 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TWIST2Q8WVJ9 160 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TRIM43Q96BQ3 446 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ELAC1Q9H777 363 aaKnown RBP11.8□□□□□ -0.52
SYNPO-202ENST00000394243 VWA7Q9Y334 891 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TULP3O75386 442 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 SERPINA3P01011 423 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 CREB1P16220 341 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 CDKL1Q00532 357 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TIGD6Q17RP2 521 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ANKRD26P1Q6NSI1 321 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 DOK6Q6PKX4 331 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 SLITRK4Q8IW52 837 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 STARD7Q9NQZ5 370 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 MKLN1Q9UL63 735 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ARPC4-TTLL3A0A0A6YYG9 625 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 EML1O00423 815 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 GNAO1P09471 354 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 COL6A1P12109 1028 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ABL2P42684 1182 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms