RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RPS3AP61247 264 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ISL1P61371 349 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SETQ01105 290 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 NEDD9Q14511 834 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CTF1Q16619 201 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CCDC96Q2M329 555 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SNX30Q5VWJ9 437 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 RGMBQ6NW40 437 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TMEM81Q6P7N7 255 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 C19orf48Q6RUI8 117 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 RRM2BQ7LG56 351 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 DSELQ8IZU8 1212 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 NGEFQ8N5V2 710 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SLC24A4Q8NFF2 622 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 HMGCLL1Q8TB92 370 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ETNPPLQ8TBG4 499 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 WBP1Q96G27 269 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF570Q96NI8 536 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 PIP5K1AQ99755 562 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CMKLR1Q99788 373 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SDF4Q9BRK5 362 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 C17orf75Q9HAS0 396 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 BRF2Q9HAW0 419 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 MKKSQ9NPJ1 570 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ABCF3Q9NUQ8 709 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 DDX43Q9NXZ2 648 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 MPP6Q9NZW5 540 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 KIAA1456Q9P272 454 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 HSPB7Q9UBY9 170 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CARD8Q9Y2G2 431 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ATXN2Q99700 1313 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TAF1P21675 1872 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ANKRD18BA2A2Z9 1011 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 FAM172BPA6NC97 362 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 A6NCN8 305 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TIPRLO75663 272 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 CLEC3BP05452 202 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 CENPBP07199 599 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 MYOD1P15172 320 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 AGAP20933 346 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 POU1F1P28069 291 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 CORO1AP31146 461 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ABCD1P33897 745 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TIMP3P35625 211 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 CTCFP49711 727 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ATP12AP54707 1039 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 PDE1CQ14123 709 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TAF11Q15544 211 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 FAM205BPQ63HN1 556 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 LCTLQ6UWM7 567 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 RAD9BQ6WBX8 426 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 PXKQ7Z7A4 578 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TADA2BQ86TJ2 420 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 SCCPDHQ8NBX0 429 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 AGBL3Q8NEM8 1001 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ABTB1Q969K4 478 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 OTULINQ96BN8 352 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 KLHL29Q96CT2 875 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF501Q96CX3 271 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 SAAL1Q96ER3 474 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 NEUROD6Q96NK8 337 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 GLIS2Q9BZE0 524 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 RANBP17Q9H2T7 1088 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF696Q9H7X3 374 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 MAGEE1Q9HCI5 957 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF334Q9HCZ1 680 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 C20orf141Q9NUB4 165 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 PADI1Q9ULC6 663 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 LAS1LQ9Y4W2 734 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 STON1Q9Y6Q2 735 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 A0A1W2PQM1 296 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 CAPN9O14815 690 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 LDLRAD4O15165 306 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 MTA2O94776 668 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 LDLRP01130 860 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 MCM3P25205 808 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 SHMT1P34896 483 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ARF3P61204 181 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ARF1P84077 181 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TMEM115Q12893 351 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 EIF4A2Q14240 407 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TOMM20Q15388 145 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 MED22Q15528 200 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 SYT16Q17RD7 645 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 PPP6R3Q5H9R7 873 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 TAOK1Q7L7X3 1001 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 FASTKD5Q7L8L6 764 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 WDR63Q8IWG1 891 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 NME8Q8N427 588 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ZCCHC9Q8N567 271 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ZBTB2Q8N680 514 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 DMBX1Q8NFW5 382 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 FBXL8Q96CD0 374 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 PABPC5Q96DU9 382 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 FBXO17Q96EF6 278 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 PERPQ96FX8 193 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF583Q96ND8 569 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ITPAQ9BY32 194 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 GPR108Q9NPR9 543 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 EIF2B3Q9NR50 452 aaKnown RBP2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms