RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 TUBB1Q9H4B7 451 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 POLG2Q9UHN1 485 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 ERGIC3Q9Y282 383 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 B3GNT3Q9Y2A9 372 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 OAS3Q9Y6K5 1087 aaKnown RBP21.09■□□□□ 0.97
UPF3A-202ENST00000375299 TNPO2O14787 897 aaKnown RBP21.08■□□□□ 0.97
UPF3A-202ENST00000375299 DYNC1LI2O43237 492 aaPredicted RBP21.08■□□□□ 0.97
UPF3A-202ENST00000375299 ALBP02768 609 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 HGFP14210 728 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 AXLP30530 894 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 CYP2C18P33260 490 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 PCBP1Q15365 356 aaKnown RBP eCLIP21.08■□□□□ 0.97
UPF3A-202ENST00000375299 FSCN1Q16658 493 aaKnown RBP21.08■□□□□ 0.97
UPF3A-202ENST00000375299 RGS21Q2M5E4 152 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 RABL3Q5HYI8 236 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 GALNT18Q6P9A2 607 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 OR13J1Q8NGT2 312 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 KATNBL1Q9H079 304 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 RIC8BQ9NVN3 520 aa21.08■□□□□ 0.97
UPF3A-202ENST00000375299 MYBPHLA2RUH7 354 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 SIX3O95343 332 aaPredicted RBP21.08■□□□□ 0.96
UPF3A-202ENST00000375299 CD1DP15813 335 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 CDH3P22223 829 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 BDNFP23560 247 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 EEF1B2P24534 225 aaKnown RBP21.08■□□□□ 0.96
UPF3A-202ENST00000375299 ELK4P28324 431 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 SNX17Q15036 470 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 TIGD7Q6NT04 549 aaPredicted RBP21.08■□□□□ 0.96
UPF3A-202ENST00000375299 KDELC1Q6UW63 502 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 LDB1Q86U70 411 aaPredicted RBP21.08■□□□□ 0.96
UPF3A-202ENST00000375299 TSPEARQ8WU66 669 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 SNX19Q92543 992 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 KCNA7Q96RP8 456 aa21.08■□□□□ 0.96
UPF3A-202ENST00000375299 POLR3BQ9NW08 1133 aaPredicted RBP21.08■□□□□ 0.96
UPF3A-202ENST00000375299 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.08■□□□□ 0.96
UPF3A-202ENST00000375299 COL4A4P53420 1690 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 A0A1W2PP18 115 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 ADAM23O75077 832 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 IGFBP6P24592 240 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 SERPINH1P50454 418 aaKnown RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 CDC42EP1Q00587 391 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 GNA12Q03113 381 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 TUBA3CQ13748 450 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 AASDHQ4L235 1098 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 BROXQ5VW32 411 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 IL31Q6EBC2 164 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 TBPL2Q6SJ96 375 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 RAB44Q7Z6P3 723 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 SFRP1Q8N474 314 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 ARRDC4Q8NCT1 418 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 OR52K2Q8NGK3 314 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 SH3RF2Q8TEC5 729 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 RAB2BQ8WUD1 216 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 ITPKCQ96DU7 683 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 GLT1D1Q96MS3 346 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 ARMC7Q9H6L4 198 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 GPN2Q9H9Y4 310 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 ARNT2Q9HBZ2 717 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 GMIPQ9P107 970 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 MT-ND1P03886 318 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 UBXN11Q5T124 520 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 EGFLAMQ63HQ2 1017 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 MUS81Q96NY9 551 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 CATSPERBQ9H7T0 1116 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 NANOGQ9H9S0 305 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 TRNAU1APQ9NX07 287 aaKnown RBP21.07■□□□□ 0.96
UPF3A-202ENST00000375299 SEPT3Q9UH03 358 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 BTRCQ9Y297 605 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 GPR45Q9Y5Y3 372 aa21.07■□□□□ 0.96
UPF3A-202ENST00000375299 LRRC14BA6NHZ5 514 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 H0Y858 1186 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 FGF10O15520 208 aaPredicted RBP21.06■□□□□ 0.96
UPF3A-202ENST00000375299 CLPXO76031 633 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 PAPSS2O95340 614 aaPredicted RBP21.06■□□□□ 0.96
UPF3A-202ENST00000375299 S1PR4O95977 384 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 LINC00032P0C843 101 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 EEFSECP57772 596 aaKnown RBP21.06■□□□□ 0.96
UPF3A-202ENST00000375299 KCNK10P57789 538 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 SMG8Q8ND04 991 aaKnown RBP21.06■□□□□ 0.96
UPF3A-202ENST00000375299 GPRC5AQ8NFJ5 357 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 NRBF2Q96F24 287 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 SEPHS2Q99611 448 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 BDH2Q9BUT1 245 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 TLR9Q9NR96 1032 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 RGS18Q9NS28 235 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 NDFIP2Q9NV92 336 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 PSME2Q9UL46 239 aa21.06■□□□□ 0.96
UPF3A-202ENST00000375299 ASPDHA6ND91 283 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 SLC7A4O43246 635 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 B4GAT1O43505 415 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 SNAI1O95863 264 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-202ENST00000375299 HOXC13P31276 330 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 GJA5P36382 358 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 RYBPQ8N488 228 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-202ENST00000375299 SENP8Q96LD8 212 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 NSUN5Q96P11 429 aaKnown RBP21.05■□□□□ 0.96
UPF3A-202ENST00000375299 MFSD1Q9H3U5 465 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 PTCH2Q9Y6C5 1203 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 C1orf232A0A0U1RR37 186 aa21.05■□□□□ 0.96
UPF3A-202ENST00000375299 H3BMM5 538 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms