RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TRAPPC11Q7Z392 1133 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 ZBTB46Q86UZ6 589 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 SETD9Q8NE22 299 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 TRPV3Q8NET8 790 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 PSMA8Q8TAA3 256 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 ZNF566Q969W8 418 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 MYOCQ99972 504 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 BEX2Q9BXY8 128 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 FBRSQ9HAH7 460 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 DMGDHQ9UI17 866 aaKnown RBP8.63□□□□□ -1.03
SYNE1-206ENST00000367253 SERTAD3Q9UJW9 196 aa8.63□□□□□ -1.03
SYNE1-206ENST00000367253 ALS2Q96Q42 1657 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SLIT2O94813 1529 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 FAM20BO75063 409 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 FASP25445 335 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 NUDT1P36639 197 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TKTL1P51854 596 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CEBPGP53567 150 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 RAB25P57735 213 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 RPS7P62081 194 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 DRAP1Q14919 205 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ELOCQ15369 112 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 DDR2Q16832 855 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 AMZ1Q400G9 498 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 LIN54Q6MZP7 749 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 AFTPHQ6ULP2 937 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 LCTLQ6UWM7 567 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 MARK2Q7KZI7 788 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SMIM15Q7Z3B0 74 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 HID1Q8IV36 788 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 RADILQ96JH8 1075 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 MAGEB18Q96M61 343 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CBWD1Q9BRT8 395 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 RHBGQ9H310 441 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ELAC1Q9H777 363 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 PADI4Q9UM07 663 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 GTF2A1LQ9UNN4 478 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 EIF3LQ9Y262 564 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 DNAJC16Q9Y2G8 782 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 PARP4Q9UKK3 1724 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ACKR2O00590 384 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SCAMP2O15127 329 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SLC16A3O15427 465 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 OIP5O43482 229 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 LDOC1O95751 146 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 HOXB2P14652 356 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CCKBRP32239 447 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 STX4Q12846 297 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 DDX39BQ13838 428 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 QPRTQ15274 297 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ANO7Q6IWH7 933 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 C16orf46Q6P387 395 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 LRRC74BQ6ZQY2 392 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 IZUMO1Q8IYV9 350 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SPARTQ8N0X7 666 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 DBF4BQ8NFT6 615 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TEX47Q8TBZ9 253 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TUBGCP5Q96RT8 1024 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 RXFP1Q9HBX9 757 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 NKIRAS2Q9NYR9 191 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CA14Q9ULX7 337 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TMEM150CB9EJG8 249 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 M0R036 132 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ABCB7O75027 752 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 APRTP07741 180 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 HBQ1P09105 142 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 POU1F1P28069 291 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 EVI2BP34910 448 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CCNIQ14094 377 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CBWD3Q5JTY5 395 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 Q5PR19 223 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CBWD5Q5RIA9 395 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 PLPPR4Q7Z2D5 763 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SCUBE3Q8IX30 993 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TMEM192Q8IY95 271 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CACTIN-AS1Q8N1I8 211 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 AMER2Q8N7J2 671 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ATG16L2Q8NAA4 619 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ATAD1Q8NBU5 361 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 DPF1Q92782 380 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CD101Q93033 1021 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 HIST1H2AAQ96QV6 131 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SECISBP2Q96T21 854 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TBCBQ99426 244 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ZNF184Q99676 751 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 RBM12Q9NTZ6 932 aaKnown RBP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 NPIPA5A0A0B4J1W7 369 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 CYP21A2P08686 494 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ABCG1P45844 678 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 PSME3P61289 254 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 TLR1Q15399 786 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 POTEGQ6S5H5 508 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 SMIM5Q71RC9 77 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 STRADAQ7RTN6 431 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.62□□□□□ -1.03
SYNE1-206ENST00000367253 GDPD5Q8WTR4 605 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 PPP1R13LQ8WUF5 828 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 ADIPOR1Q96A54 375 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 POM121Q96HA1 1249 aa8.62□□□□□ -1.03
SYNE1-206ENST00000367253 HGH1Q9BTY7 390 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms