RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 USP45Q70EL2 814 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 MON1BQ7L1V2 547 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 NLRP8Q86W28 1048 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 ZNF761Q86XN6 746 aaPredicted RBP13.76□□□□□ -0.21
VPS29-201ENST00000360579 ARHGAP12Q8IWW6 846 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 BBS5Q8N3I7 341 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 AVL9Q8NBF6 648 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 GALNT11Q8NCW6 608 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 NCSTNQ92542 709 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 SCRN2Q96FV2 425 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 NUDCD1Q96RS6 583 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.76□□□□□ -0.21
VPS29-201ENST00000360579 DHX35Q9H5Z1 703 aaKnown RBP13.76□□□□□ -0.21
VPS29-201ENST00000360579 APMAPQ9HDC9 416 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 POLHQ9Y253 713 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 PLEKHM1Q9Y4G2 1056 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 INPP4BO15327 924 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 RFPL1O75677 317 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 ERCC2P18074 760 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 BECN1Q14457 450 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 TCP11X2Q5H9J9 407 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 PPP1R15BQ5SWA1 713 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 ERMARDQ5T6L9 678 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 ATP1A1-AS1Q5TC04 95 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 ARHGAP36Q6ZRI8 547 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 TECPR1Q7Z6L1 1165 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 SLC9B2Q86UD5 537 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 PLXDC1Q8IUK5 500 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 NDUFAF2Q8N183 169 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 AP2M1Q96CW1 435 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 MCCC1Q96RQ3 725 aaPredicted RBP13.75□□□□□ -0.21
VPS29-201ENST00000360579 ULBP3Q9BZM4 244 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 NLRC4Q9NPP4 1024 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 FAM207AQ9NSI2 230 aaPredicted RBP13.75□□□□□ -0.21
VPS29-201ENST00000360579 SEPT11Q9NVA2 429 aaKnown RBP13.75□□□□□ -0.21
VPS29-201ENST00000360579 KCND3Q9UK17 655 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 TMEM98Q9Y2Y6 226 aa13.75□□□□□ -0.21
VPS29-201ENST00000360579 RP1L1Q8IWN7 2480 aaPredicted RBP13.74□□□□□ -0.21
VPS29-201ENST00000360579 TRBV23OR9-2A0A075B6M9 112 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 NPIPB15A6NHN6 443 aaPredicted RBP13.74□□□□□ -0.21
VPS29-201ENST00000360579 TPM2P07951 284 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 ANKRD34CP0C6C1 535 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 DLSTP36957 453 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 SLC10A7Q0GE19 358 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 NFATC2Q13469 925 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 C6orf15Q6UXA7 325 aaPredicted RBP13.74□□□□□ -0.21
VPS29-201ENST00000360579 MARK2Q7KZI7 788 aaKnown RBP13.74□□□□□ -0.21
VPS29-201ENST00000360579 ZNF765Q7L2R6 523 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 PSTKQ8IV42 348 aaKnown RBP13.74□□□□□ -0.21
VPS29-201ENST00000360579 NPWQ8N729 165 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 EXD1Q8NHP7 514 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 NSMCE3Q96MG7 304 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 HERPUD2Q9BSE4 406 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 GPATCH2LQ9NWQ4 482 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 PPIL1Q9Y3C6 166 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 CREBBPQ92793 2442 aa13.74□□□□□ -0.21
VPS29-201ENST00000360579 ICE1Q9Y2F5 2266 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 KIR2DS5A0A0G2JLQ3 304 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 A0A0G2JNG1 304 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 OR5K4A6NMS3 321 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 TTLL8A6PVC2 850 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 KIR2DS3K7RE56 304 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 PGLSO95336 258 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 RECKO95980 971 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 SOD1P00441 154 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 ZNF30P17039 623 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 NR1D1P20393 614 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 MAPK9P45984 424 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 HCAR3P49019 387 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 PMS2P54278 862 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 UBE2HP62256 183 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 ERV3-1Q14264 604 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 KIR2DS5Q14953 304 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 PPP6R3Q5H9R7 873 aaPredicted RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 CT47A1Q5JQC4 288 aaPredicted RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 FKBP15Q5T1M5 1219 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 ARMC12Q5T9G4 340 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 CAPRIN2Q6IMN6 1127 aaKnown RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 PPP1R2P3Q6NXS1 205 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 IYDQ6PHW0 289 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 TSPAN33Q86UF1 283 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 RAVER1Q8IY67 606 aaKnown RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 SSC4DQ8WTU2 575 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 NSMCE1Q8WV22 266 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 STAMBPL1Q96FJ0 436 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 MGME1Q9BQP7 344 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 ABCG8Q9H221 673 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 NOD2Q9HC29 1040 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 CUEDC1Q9NWM3 386 aaPredicted RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 SIDT1Q9NXL6 827 aaKnown RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 TAB2Q9NYJ8 693 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 VPS18Q9P253 973 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 CNOT8Q9UFF9 292 aaKnown RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 KLHL3Q9UH77 587 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 ZNHIT2Q9UHR6 403 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 CROTQ9UKG9 612 aa13.73□□□□□ -0.21
VPS29-201ENST00000360579 MRPS18BQ9Y676 258 aaKnown RBP13.73□□□□□ -0.21
VPS29-201ENST00000360579 MN1Q10571 1320 aaPredicted RBP13.72□□□□□ -0.21
VPS29-201ENST00000360579 TTC24A2A3L6 582 aaPredicted RBP13.72□□□□□ -0.21
VPS29-201ENST00000360579 TOX3O15405 576 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms